Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00250 ATGGGAAAATTGAGATGGGGTGTGGTGAATGATTTTCCTTGGCAACAAGTTGAGATGAGTAGCCAAAAGGGTCATTATGAAGAAGGGATGGGTTCTTCGGAGGTCACTGGGAAAGTGGTGGTGGTTGCAGTCAAAGCTTCCAAAGATATTTCAAGGACTGCTTTGGTGTGGGCTTTGACTCATGTTGTTCAACCAGGGGATTGCATTAAGCTATTGGTCCTCATTCCAGCTCTCTCCTCAAGCAAGAGGGTATGGGGCCTTTCAAGATTTACTACTGATTGTACCTCTAGTCACTGGAGATCCCGTTTAGGAACTCCTTCAGATCAGAAAGAAGTTATTACAAATTCCTGTTCTCAATTAGTGCTTCAACTTCATGATTTTTATGACCCAGAGAAGATAAAGATCAGAGTAAAGATTCTTTCTGGTTCTTTATGTGGAGCTGTGGCTGCTGAAGCCAAGAGAGTCCAAGCAAGCTGGGTTATATTGGAGAAAAAATTGAAACCTGAAAAGAAGTACTGCATGGAGCAGCTGCATTGCAATATTGTAATTATGAAGCGGTCTCAACCAAAGATTCTACGCTTGAATTTGAATGGTTCACCAAAGATGGAACTCAAAAGGGATTGTTCATTGTCATTGGAGCAGAATTTATATACTAGAAACTTAAAAGACAACTATGAACATCCAGATGTAATTAGAGGTCCAGCTGTTACTCCTGCTAGTAGTCCAGAACAAGGGTCACCACCATTAACTGCAACTGATATTGGAACATCATCAATATCAAGCTCAGATCCTGGGACTTCACCATTTTTCCACTCTGATAATTATGAAAGAAGAAGGAGGGGTTTTCCCTTTATTCATGAAGGACTGACAAACCTGGAGGAAATTGAATCTGACTCAGAGAGTGAAAAGCTAAGTTTATCATCCAAAAGTTCATATTTTCAGCCATGGATTGCAAATGTAATTTGTATTGATGGTGAATTCTCAAAACATGAGGACAATATGCAACAATCTAGTGATAAGGCTTTGGTTTCTACCTACGAAGCTTTGCTTCAGAAATTCTCAAAGTTGGATCAAGATCCTGTCTTAGGAGTACTTAATTGTAAAATTGATGTGAACTTAAGCAAAAGTGTTAGAGAAGCAATTTCACTAGCCAAAAGTGCTCCTCCTGGACCTCCCCCATTGTGTTCTATTTGTCAGCACAAGGCACCTGTGTTTGGGAATCCTCCAAGATGGTTTACATTTGCTGAATTGCAGCTTGCTACTGGTGGTTTTTCACAAGCAAACTTCTTGGCTGAAGGCGGTTTTGGTTCTGTACACCGTGGTGTCCTACCTGATGGGCAGGTGATTGCTGTGAAGCAGTATAAATTAGCCAGTACTCAAGGAGATAAAGAATTTTGCTCAGAAGTAGAGGTTTTAAGCTGTGCTCAACATCGTAATGTTGTGATGCTAATTGGGTTTTGTGTGGAAGATGGAAGAAGATTGCTAGTTTATGAATACCTTTGCAATGGATCTCTGGATTCTCATCTCTATGGACGAAAGCAGAATGTATTGGAATGGTCTGCACGGCAAAAAATTGCAGTTGGAGCAGCTCGTGGTTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGCATTGTGCACCGTGATATGAGGCCTAACAATATCCTCCTCACTCATGATTTTGAAGCATTAGTGGGAGATTTTGGACTTGCTAGGTGGCAGCCAGATGGAGATATGGGTGTGGAAACCAGGGTGATAGGAACATTTGGGTATTTGGCGCCAGAATATGCTCAAAGTGGTCAAATTACTGAAAAAGCTGATGTGTACTCATTTGGGATAGTATTACTGGAGCTTGTGACAGGACGAAAAGCCGTGGATATAAACCGCCCCAAGGGCCAGCAATGCCTCAGTGAATGGGCACGGCCATTGCTTGAAGAACAAGCCACTCATAAACTGGTAGATCCGAGCATAAGGAACTGCTATGTTGATCAAGAGGTTTATCGCATGCTGCAGTGTTCCTCTTTGTGCATCCAACGAGATCCTCATTTAAGGCCTAGAATGTCTCAGGTGCTCAAGATGTGGAAGGTGACATTCTCATGTGATTTAAAATAA 2112 0.4176 MGKLRWGVVNDFPWQQVEMSSQKGHYEEGMGSSEVTGKVVVVAVKASKDISRTALVWALTHVVQPGDCIKLLVLIPALSSSKRVWGLSRFTTDCTSSHWRSRLGTPSDQKEVITNSCSQLVLQLHDFYDPEKIKIRVKILSGSLCGAVAAEAKRVQASWVILEKKLKPEKKYCMEQLHCNIVIMKRSQPKILRLNLNGSPKMELKRDCSLSLEQNLYTRNLKDNYEHPDVIRGPAVTPASSPEQGSPPLTATDIGTSSISSSDPGTSPFFHSDNYERRRRGFPFIHEGLTNLEEIESDSESEKLSLSSKSSYFQPWIANVICIDGEFSKHEDNMQQSSDKALVSTYEALLQKFSKLDQDPVLGVLNCKIDVNLSKSVREAISLAKSAPPGPPPLCSICQHKAPVFGNPPRWFTFAELQLATGGFSQANFLAEGGFGSVHRGVLPDGQVIAVKQYKLASTQGDKEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYLCNGSLDSHLYGRKQNVLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAVDINRPKGQQCLSEWARPLLEEQATHKLVDPSIRNCYVDQEVYRMLQCSSLCIQRDPHLRPRMSQVLKMWKVTFSCDLK 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00250 703 ProSitePatterns Tyrosine protein kinases specific active-site signature. 545 557 IPR008266 GO:0004672|GO:0006468
Sebi20g00250 703 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 396 499 - -
Sebi20g00250 703 Pfam Protein tyrosine and serine/threonine kinase 428 692 IPR001245 GO:0004672|GO:0006468
Sebi20g00250 703 PANTHER OS01G0750732 PROTEIN 182 696 - -
Sebi20g00250 703 ProSiteProfiles Protein kinase domain profile. 424 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi20g00250 703 SUPERFAMILY Protein kinase-like (PK-like) 404 694 IPR011009 -
Sebi20g00250 703 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 500 702 - -
Sebi20g00250 703 CDD STKc_IRAK 430 693 - -
Sebi20g00250 703 Gene3D Phosphorylase Kinase; domain 1 396 499 - -
Sebi20g00250 703 MobiDBLite consensus disorder prediction 239 269 - -
Sebi20g00250 703 Gene3D Transferase(Phosphotransferase) domain 1 500 699 - -
Sebi20g00250 703 MobiDBLite consensus disorder prediction 228 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00250 Sebi-Chr20 2765374 2769558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00250 383 690 Trihelix Transcription Factor Family AT1G68690 50.641 4.96e-101 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Sebi20g00250 PK_Tyr_Ser-Thr 3.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00250 - - aprc:113855006 1231.08