Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00244 ATGATGTTAGGGGAACCCCACCGTGCAAATCCAACCGTACACGTGCCTCCGTGGCCGATCGTTAATGATTCAACGCCGGAGATCTTTTCCCCGTTAACCGCCAATGCCGATTACTCTCCGTTTTACTTGCAGGAAGCACTGAATGCGCTTCAGCAATATGTTCCCTCCTACGACCATGACGCCGATTCTGACTCGGAGGTTCCGAGTCGTGAATCGTTGGATGCATACTCGTGCGATCATTTCCGCATGTTCGAGTTCAAGGTTCGGAAATGCGCACGTGGCAGGTCACATGACTGGACGGAGTGCCCTTACGCTCATCCCGGCGAGAAGGCTCGCCGCCGTGACCCAAGGAAGTACCACTATTCCGGCACGGCGTGCCCCGATTTTCGCAAGGGGAATTGCAAGAAAGGTGATGCATGTGAGTTCGCTCATGGAGTGTTCGAGTGCTGGCTCCACCCTGCGCGCTACCGGACTCAGCCTTGTAAGGACGGCACCAGTTGCCGCCGGAGGGTGTGTTTCTTCGCTCACACGCCGGAGCAACTCAGGGTCCTTCCTCAGCAGAGTCCCCGGAGTGTGAACTCCGCTGCTGATTCTTATGATGGTTCCCCTCTGAGACTCGCGATTGAGTCTTCTTGTGCCAAGACGCTTCCATTCATGTCTTCTCCTGGTTCGGTTTCCCCGCCGGTGACTCCTCCAACGGAGTCTCCGCCGTTGTCTCCGATGACTCGGTCGCTGAGCCGGTCTCTGGGTTCGAACTCTGTTAGTGTGAATGAGATGGTGGCTTCTCTGCGTAATTTGCAACTTGGTAAGGTGAAGTCCTTGCCATCTTCTTGGAATGTTCCAGTGGGAATGGGGTCTCCTGGATTCGGATCCCCGAGAGGACCCGTGATCCGACCCGGATTCTGTAGCCTGCCATCGACCCCTACGCAGGCACCATCGCGTGGTGGTGTTAACTATTTTGATCTTTGGGATCAGAGGTGTGAGGAGGAGCCTGTGATGGAGAGGGTGGAGTCTGGAAGAGACATAAGGGCGAAGATGTTTGAGAAATTAAGCAAAGAGAATTCTCTGGGCAGATCGGGTTCGGGTACAGTGGATGGAGCTCCGGATATTGGATGGGTGTCGGAGCTGGTGAGCCCCTTCTTGGGTTGA 1149 0.5527 MMLGEPHRANPTVHVPPWPIVNDSTPEIFSPLTANADYSPFYLQEALNALQQYVPSYDHDADSDSEVPSRESLDAYSCDHFRMFEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSVNSAADSYDGSPLRLAIESSCAKTLPFMSSPGSVSPPVTPPTESPPLSPMTRSLSRSLGSNSVSVNEMVASLRNLQLGKVKSLPSSWNVPVGMGSPGFGSPRGPVIRPGFCSLPSTPTQAPSRGGVNYFDLWDQRCEEEPVMERVESGRDIRAKMFEKLSKENSLGRSGSGTVDGAPDIGWVSELVSPFLG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00244 382 Gene3D - 120 184 - -
Sebi20g00244 382 PANTHER UNKEMPT FAMILY MEMBER 45 377 IPR045234 -
Sebi20g00244 382 MobiDBLite consensus disorder prediction 224 238 - -
Sebi20g00244 382 FunFam Zinc finger CCCH domain-containing protein 66 78 146 - -
Sebi20g00244 382 ProSiteProfiles Zinc finger C3H1-type profile. 121 147 IPR000571 GO:0046872
Sebi20g00244 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 145 IPR000571 GO:0046872
Sebi20g00244 382 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Sebi20g00244 382 SMART c3hfinal6 155 178 IPR000571 GO:0046872
Sebi20g00244 382 MobiDBLite consensus disorder prediction 220 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00244 Sebi-Chr20 2671367 2672515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00244 76 281 C2H2 Transcription Factor Family AT5G12850 48.077 8.82e-57 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi20g00244 zf-CCCH 3.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00244 - - qsa:O6P43_003933 603.979