Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00239 ATGAACAGGGAGAAATACGAGAGGCAAATTGTGAGGGTTGATGCAAAGAGAGCGTTGGTCGGAGCAGGTGCCCGAATTCTGTTTTATCCGACGCTTTTGTATAATGTGCTTCGTAACAAGATTGAAGCTGAGTTCCGGTGGTGGGATCAAATTGATGAGTTTTTATTGCTCGGCGCAGTCCCGTTCCCCAAAGATGTTCCTCACTTGAAGGAGCTTGGTGTGGGTGGTGTGATTACTCTGAATGAACCTTATGAAACTTTGGTGCCGTCATCATTATATCATGAAGTTGTGGATTCTCTGTTGTCCGCTCAAGAGTATACCTGGGCTCATGGGATTGATCATTTGGTAATTCCCACAAGGGATTATCTCTTTGCCCCCTCATCTGTGGATATCAGCCGGGCAGTGCAGTTCATTCATCAGAATGCAACTTGCGGAAAAACTACTTATGTTCACTGTAAAGCTGGGCGGGGAAGGAGTACTACAATTGTGCTTTGTTATCTGGTGGAATACAAACACATGACACCTGCTGCTGCCCTGGAATATGTGAGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGGCTGTTCAAGACTATAACAAGCGAAAACCTTGTCCTTTAGCATGCTCTCCCTCTGGGGATGAAGTTCTTATAACCAAAGCTGATCTTGAAGGTTATCATAGCACAAATGATGCTGGTATGGAGCTGGCCATTGTTCCTAAAGTGCCAAAGACTAAGCCCATGATAGCAAGACTATCTTGCCTGTTTGCATCCTTAAAAGTACCTAGTGGTAGTAGTGTACCAATGACGAGGCGGCTGCCAGTTTCTGAGTCACGTGCCTGCTAA 855 0.4585 MNREKYERQIVRVDAKRALVGAGARILFYPTLLYNVLRNKIEAEFRWWDQIDEFLLLGAVPFPKDVPHLKELGVGGVITLNEPYETLVPSSLYHEVVDSLLSAQEYTWAHGIDHLVIPTRDYLFAPSSVDISRAVQFIHQNATCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPAAALEYVRSRRPRVLLAPSQWKAVQDYNKRKPCPLACSPSGDEVLITKADLEGYHSTNDAGMELAIVPKVPKTKPMIARLSCLFASLKVPSGSSVPMTRRLPVSESRAC 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00239 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 47 208 IPR020422 GO:0006470|GO:0008138
Sebi20g00239 284 FunFam Dual specificity phosphatase domain protein 47 208 - -
Sebi20g00239 284 CDD PTPMT1 47 205 IPR044596 GO:0004721
Sebi20g00239 284 ProSitePatterns Tyrosine specific protein phosphatases active site. 150 160 IPR016130 GO:0016311|GO:0016791
Sebi20g00239 284 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 7 261 - -
Sebi20g00239 284 Gene3D Protein tyrosine phosphatase superfamily 47 206 IPR029021 -
Sebi20g00239 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 41 204 IPR029021 -
Sebi20g00239 284 SMART dsp_5 75 205 IPR020422 GO:0006470|GO:0008138
Sebi20g00239 284 Pfam Dual specificity phosphatase, catalytic domain 110 204 IPR000340 GO:0008138|GO:0016311
Sebi20g00239 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 197 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00239 Sebi-Chr20 2578228 2579913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00239 9 263 Protein tyrosine phosphatase (PTP) family AT2G35680 51.864 2.04e-97 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00239 - - gmx:100817410 495.738