Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00232 ATGTCAAATTTACATTCCATTTTCTATGTTTTAGTAGCTCTTCTTATTCTGCAAAATCCCAATGTAGCACAATGCCATACCAAGGGAATTCGACCAAGGCATTCTGTATGGACTGGACTATCAATGAATATGACCAGAATCCAAAACTCAGAACAACAGTTCATGAAATGGGTGAGATTTGTTGGTGGCCTCAGACACTCTATCTTCAGAACAGCCAAAAATAAGCTCTTTCCTTCATACACATTGCATGTTTCTAAGCATGGAGGTAAAGGGGGTTTCTCATCAATTCAAGAAGCCATTGATTCCCTTCCATTCATCAATCTAGTGAGAGTGGTCATTAAGGTTCATGCAGGGGTTTACACGGAGAAAGTTGAGATTCCTCCTTTTAAATCCTTCATAACCATTCAAGGAGCAGGAGCAGATAAAACCATTGTTCAATGGGGTGACACTGCTCAAACTCTTGGGCCAAAAGGCCAGCCACTGGGAACCTATGGTTCTGCAACTTTTGCTGTGAATTCACCTTATTTCATTGCCAAGAACATCACATTCAAAAACACTGCCCCAGTTCCACGACCAGGAGCAGTTGGAAAACAAGCAGTGGCATTGAGAATCTCAGCAGATACAGCAATATTCCTTGGCTGCAAATTCTTTGGAGCACAGGACACGCTCTATGATCATGTGGGTAGGCATTACTACAAGGATTGTTATATTGAAGGCTCTGTTGATTTCATATTCGGCAATGGTCTCTCTCTATTTGAGGGGTGTCACGTGCATGCCATAGCACAAAATACAGGGGCCCTAACAGCCCAAGGAAGGAACAGTCTATTAGAAGACACGGGTTTCTCGTTCGTTCACTGTAAGGTCACGGGCTCAGGAGCACTATACCTTGGAAGGGCCTGGGGTCCCTTCTCTCGTGTTGTCTTTGCTTACACTTACATGGACAATATCATCATTCCCAAAGGCTGGTATAATTGGGGCGATCCCAACCGTGAAATGACTGTATTCTATGGACAGTACAAATGCACAGGACCAGGAGCAAGCTTTGCAGGGAGAGTATCATGGTCAAGGGAGCTCACCGATGAGGAAGCTAAACCATTTATTTCACTTAGCTACATTGATGGCTCTGAATGGATCAATTCTTTATTTTGA 1149 0.4343 MSNLHSIFYVLVALLILQNPNVAQCHTKGIRPRHSVWTGLSMNMTRIQNSEQQFMKWVRFVGGLRHSIFRTAKNKLFPSYTLHVSKHGGKGGFSSIQEAIDSLPFINLVRVVIKVHAGVYTEKVEIPPFKSFITIQGAGADKTIVQWGDTAQTLGPKGQPLGTYGSATFAVNSPYFIAKNITFKNTAPVPRPGAVGKQAVALRISADTAIFLGCKFFGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIAQNTGALTAQGRNSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWSRELTDEEAKPFISLSYIDGSEWINSLF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00232 382 SUPERFAMILY Pectin lyase-like 77 380 IPR011050 -
Sebi20g00232 382 FunFam Pectinesterase 78 380 - -
Sebi20g00232 382 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 76 379 - -
Sebi20g00232 382 ProSitePatterns Pectinesterase signature 2. 237 246 IPR033131 -
Sebi20g00232 382 Gene3D - 79 381 IPR012334 -
Sebi20g00232 382 Pfam Pectinesterase 87 374 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00232 Sebi-Chr20 2485022 2487692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00232 89 378 Carbohydrate Esterase AT5G47500 51.546 1.15e-105 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00232 K01051 - gmx:100802832 689.878