Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00225 ATGGATAACGTTGGCGCTATGGTTTCACAGAACATGGTGGTGCCGCTGTCGGTGCCAACGTCCATAGATTTGGAAATCTTCGATCTGGACGAGGCTCTTGCGGTGGTCGGAGAATCACGCTGCCTGTTTGGGGCGTGGAAGACCTTTGTCTCGAACTTGCCGGCGGTTGTGGAGGTCGCTGAGGACGATGTTTGCTCCGTTTGTATGGAAGGCTTTGATCGACACAACAAGTCAGGTGACGGAAACAAACGAGTGCCGTGTGGACACGTGTACCATTCAAACTGCATCACCATGTGGCTCCAGCGCTGCAATTCTTGTCCTCTTTGCCGCCGCCATATCTCCCTTCACTTCTAA 354 0.5311 MDNVGAMVSQNMVVPLSVPTSIDLEIFDLDEALAVVGESRCLFGAWKTFVSNLPAVVEVAEDDVCSVCMEGFDRHNKSGDGNKRVPCGHVYHSNCITMWLQRCNSCPLCRRHISLHF 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00225 117 ProSiteProfiles Zinc finger RING-type profile. 65 110 IPR001841 -
Sebi20g00225 117 SUPERFAMILY RING/U-box 57 115 - -
Sebi20g00225 117 SMART ring_2 65 109 IPR001841 -
Sebi20g00225 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 115 IPR013083 -
Sebi20g00225 117 Pfam Ring finger domain 64 110 IPR001841 -
Sebi20g00225 117 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 47 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00225 Sebi-Chr20 2398233 2398586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00225 64 110 C3H Transcription Factor Family AT3G60080 51.064 1.11e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00225 K22378 - gmx:102669154 149.828