Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00202 ATGAATAGAGGTGTCCTGCAAAGCTCACCGGTGCAACAAATTATGATGGCCGGTAACCCTAACAATTGGTGGAACATGCGCTCTCCTTCTTCTCCTTCTTCCAATTTTCTAACACATCCTCCATATGCTCCTCCTTCTTGGCATGAAAATCAAGATCAGCTTCCTGCAGAGTCATGGAGCCACCTACTCATGAGTGGAGTGGTGACTACTGAAGAAGAAAAGGCAGCTGGTATGTGTAAGAACTGGGAGGAACAAATGGTAATTAGTCATGAGTCTCCTCTTGTTGATGTTAAGCAAGAAAGCTGTGTATATGGAAATCAAGAATTTCATCAGGGATCAGCTAAGCCTAACCACACCTGGTCTCATTCTTCCTCCAACAACTCATCATCATGTGTTACAACAACTTTCAGCAGCAGCATGTTGGATTTCTCTAACAATAAAACCGAAACTAGGCCATCTTCTGAGTGCAATAGCAGTAGTGGAGGTGGTGGGGCATTGAAGAAAGCTAGGGTTCAACCGTCTACAACTCAGCCCACCTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACAGCCCTTCATCAACTCGTTTCCCCATTCGGGAAGACTGACACAGCATCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGGGCAGTGGATCAGGAAACATGAGGCATCAACAATCTGTAAGAAATAATAATATCAACCCATTTCTGGTTCAAGGAGAGAAGAATAGTATATTCCCTGAAGACCCCGGTCAGCTGCTGAATGAAAACAGTTTGAAGAGGAAAGCAGCTAGTGAGCAGGATTGTGAAGAAGAAGAGAAGAAGGACCTGAGAAGTAGAGGGTTGTGCCTAGTTCCAGTGTCATGCACACTGCAAGTTGGAAGTGACAATGGAGCTGACTATTGGGCCCCTGCTTTTGGAGGAGCATTTCAGTAG 987 0.4448 MNRGVLQSSPVQQIMMAGNPNNWWNMRSPSSPSSNFLTHPPYAPPSWHENQDQLPAESWSHLLMSGVVTTEEEKAAGMCKNWEEQMVISHESPLVDVKQESCVYGNQEFHQGSAKPNHTWSHSSSNNSSSCVTTTFSSSMLDFSNNKTETRPSSECNSSSGGGGALKKARVQPSTTQPTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGNMRHQQSVRNNNINPFLVQGEKNSIFPEDPGQLLNENSLKRKAASEQDCEEEEKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGAFQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00202 328 FunFam transcription factor bHLH68 isoform X1 178 231 - -
Sebi20g00202 328 MobiDBLite consensus disorder prediction 143 161 - -
Sebi20g00202 328 Coils Coil 272 297 - -
Sebi20g00202 328 Gene3D - 179 231 IPR036638 GO:0046983
Sebi20g00202 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
Sebi20g00202 328 MobiDBLite consensus disorder prediction 143 178 - -
Sebi20g00202 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 231 IPR036638 GO:0046983
Sebi20g00202 328 CDD bHLH_AtbHLH_like 178 228 IPR045239 -
Sebi20g00202 328 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 58 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00202 Sebi-Chr20 2120778 2123256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00202 1 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 41.644 1.22e-57 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00202 - - gmx:100785156 414.075