Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00201 ATGCTGTTATTTTTCGTTATCGTCATAAACCCCACAAACAGAACCTCACTTCACTCCGTTGCAACCACTGCCATGGGCACCACCGTAACCGTCACGACTCGAGCTCAGATCCTCCGTCACACCGCCGCATTCATCTCCCCCGTCCTTACTCAATCCCAACTCCGGCGCCGCCTCATTGCCACTCTCCACCGCGATTCCCCAATCTCCAGCCAAGTCACTGTTAAACACCTGAACCTCGCCGCCGACGCTCTAGAAAGCGCCATCTCCTCTTCCAGCACCGCCATTCGCTCTTCCTCCCTCACCCTCGCCGAGAAGCTCCTCCTCCCTCTCCCTGAATTCCCGGTCTCCTCCTTCCTCCTCTCCCTCATTCGCTCCCTCTGTAACCGCCCAACCGAATCCGCCATAAGCCTCCTCCGAATCTTCCATTCGAACCCTGCCCTCGCCCGATCCGAAATCGCACCGTCTCTCTACGAACACCTCTTTTCTCTCCACCTCCTCCCTGTTTTCCGGTGGTTCGATGAACAGAGAACTCGAATTTTGTCCTCCATTTCTGCGGACACCGGTGATTACTCGGTTTTGGATGAGTCGGTGGTCCTGCCTTGCACGAAATTGCTATCGAGGATGAGCGGGGATCAAGCCTCGAAGCTGAGGGAGTTGGAGAGAGAGTACGGAGAGGTTTTGGACGAGAACTGCAGGGTTTTTGCTCTGTATTTCAAAGAGGTTTTGGTGAATCAAGATGGAGAGGCAGCAATTAGTCCACCATTGTTGATACTGAAGAGCGCCGCAGAAGGTGACAGTAGGGAGAGCAGAAAGGAGGAAATGATAATGCCTGCGTTGGAGAACGGACGGTATAATCCAATGTGGTCCGAAAGGGAAGTATCTATTGAATTTTTGAGCAGCAGTACCAGCAGCAGATCATCCCCCGCACCATTATATCCTCAGAGAGTCTCTCCCAGAATCCTCAAACCCCAAAAATCTTCAAAATATTGGACAACACCAGTCTATTTAAACCCAGCCGCTGAAACTGAGTTTTCTTTAGATGAGAATTCGCTTTGTTCTTCTTCAGATTCTGAAACAGAAAGTGAGGAAAAGGACAAAAATGTGGCATTGTTGGAGCCTAGACAAAGCCAAACCCAGGAACAAATGCAAACCATCTTCAAAGAATCCATGGGTTCTCCGGATTATCCTATGACAGACTACGATAACCCGCCGCCTGGAAGTGGGAAACATACACCTCCCAAAGACTTTGTCTGCCCAATAACTAGTAACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAAACATATGAACGTAAAGCTATCGAGGAATGGTTCAATAGAGGGAACTTAACTTGTCCTATAACTCGCCAGAAGCTGCAAAACACCCAGCTACCTAAGACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACGCAACCCCAATTCAGTCCCGCCACCATGTGAGAGTCCATACGAAGATACCGAGGCAGTAGTGAAGACAACAATACCTTCAACTTCTCCTAATAGTGTAATAACACAAGCCACCTTTGATGGGATGATTAGTGAGTTACGCCATGCAATCAATAACCTGTATATGTCAGAGATTCTCGAGGAATCTGAAATGGCAGTGCTTCAAATCGAGAAATTGTGGAGAGGAGTGAATCTGGGAGTGGATATCCATAGTATGCTATCAAAACCTCCGATAATTAATGGGTTTGTGGAGATTCTTTTGAATTCTGTTGAGCCCCAGGTGCTACAAGCAGCAGTTTTCCTTCTGGCCGAGATGGGCTCTAGAGACAATGCCGTTATCCAGACTCTCACACGTGTGGATACTGACGTGGAATGTATCATGGCTCTTTTCAAGCAGGGATTGACAGAGGCTGTTGTTCTGTTGTATCTCCTAAACCCTTCCACTGTGACTCTTACAGAGATGGCCATAGTGGAGTCTCTCATAAGAGTTTTTGATAGGAAAGAGGAAGACTTGGTTAAGATGTGTTTGAAGCCCAAAACAGCTGCAGTGCTTTTACTGGCACAGATTATTGGAAGCAATGAAGAGATGATTGCATCTTTGGTTGTCAAGGCTCTTTTCTCTGAAAAAGCAATTGGAACCATTGTCAGCAGCTTGGGAGCTGAGTGGGCAGAGGAGAGAATTGCTGCAGTGGAGATCTTATTGAGATGCATGGAAGAGGATGGAACTTGCAGGAACATCATTGCCGATAAAGCAGAGCTTTCCCCTATTTTGGAAAGCTTCATCGGTGCAACTGATGGAGAGCGTTTTAAGATTGTTAAATTTTTTTCTGAGTTAATCAAATTAAATAGTTTCCCATTGGTTCCCTCCAGGAGGACATTCAATGAACAAATCCTCCACATTATCAAGGAAGAAGGACATTTTAGTACAATGCATACTCTCCTTATTCATTTGCAGACAGCCCTTCAAGATGAATGTCCAGTCATGGCCGGCCTCTTACTCCAACTTGATCTTCTGGTTGAACCAAGAAAGATGAGCATATACCGTGAAGAGGCGATGGACACTCTTATTTCATGCCTACGAAACACAGATTTCCCTGCTACCCAATTAGCAGCTGCTGATACAATCATGTCACTGCAAGGGAGGTTCAACTTCACTGGAAAGCCTCTTACCAGAGAAGTCCTTCTTAAACGTGCAGGTATTGACAAAAGTTCCAGAAGTCTTGTGCAGGTGGATAAGATCAACAACTTCTGCCCAGATCAACAAGTTCCAGAAGAAGAAAAGGCAGCTGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTTAGCCATGAGTTTGGTATACTTTTTGAAGCTTTAGCAGATGGCATGAAGAGCAGATATCCAGAACTACGTTCAGCATGCTTTATATCAGCTACGTGGCTCACATATATGTTGACCATTCTACCAGACACGGGGATACAAGGAGCAGCCCGTGTCTGCTTGCTAAAGCAGTTCATAACTAAATTAAATTCTGCTAGGGACGTTGAAGACAGAATCCTTTCTATGCTAGCTCTCAATAGCTTTCTTCATTTCTCTGATGGCATACGTGATCTAACTTCCTACACTAAAGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATCCTCTCCTTTGGCATCCGAAATGCTAAAAGTTCTGGTTGATGAGAATGAATCTAAAGCAGACATTTGGATACATAAAGAGCTAATTCAAGTAGACTGCAGAGAGAATGGAGAAGTGCTGTCTGTCATTTGCTCTAAGGATAAAATATTTTCAGGTCATACAGATGGCAGTATTAAGGTATGGACATTAAAGAATGGCTCATTCCATCTGTTGCAAGAGATCCAAGAACATTCGAAGGCTGTGACAAACTTGGTGATTTCAGAATCTGGTGACAGACTATACAGTGGTTCACTTGACCGAACTACAAAGGTCTGGTCTATTGGAGGGGCTGCAGTACATTGTTTACAGGTGCATGATATGAAGGACCAAATTCATAATTTAGTTGTAACCGATAGCATAGCTTGTTTCATTCCGCAGGGGACTGGTGTCAAGGTTCACTCATTGAATGGAGAATCAAAGTTGTTAAATTCTAATAAATATGTGAAATGCTTGGCTCATGCTAATGGGAGATTGTACTGTGGATGCCACGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGTACAGTCAATACTATTCAAAGTGGTTCTAAAAAATTACTTGGGAAAGCATATCCTATTCATGCACTACAAATTCATGGTGAACTTATATACGCAGCTGGCTCTTCCTTGGATGGATCTGCTGTAAAGATATGGAACAATTCCAATCACAGTATGGTTGGATCACTTCAAACTGGATCGGAAGTACGAGCTATGGCAGTGAGCTCAGAATTAATTTATTTGGGGTGCAAAGGAGGTGCTGTAGAAATTTGGGATAAGAAGAAACACGGAAGAGTTAACACGTTACAAGTGGGTACGCAGTGTAGGGTTACTTGCATGGCTCTAGACGGCAATGAAGAAATTTTGGTGATTGGAACTTCAGATGGCCAAATTCAGGTAGCCATGTCCACACCTATCATAGTGTGTGCTGTGCGGGTCGACAAGCTTTTCAGTGCCGAAACTGGTAAGCAAAAGGAATAA 4143 0.4463 MLLFFVIVINPTNRTSLHSVATTAMGTTVTVTTRAQILRHTAAFISPVLTQSQLRRRLIATLHRDSPISSQVTVKHLNLAADALESAISSSSTAIRSSSLTLAEKLLLPLPEFPVSSFLLSLIRSLCNRPTESAISLLRIFHSNPALARSEIAPSLYEHLFSLHLLPVFRWFDEQRTRILSSISADTGDYSVLDESVVLPCTKLLSRMSGDQASKLRELEREYGEVLDENCRVFALYFKEVLVNQDGEAAISPPLLILKSAAEGDSRESRKEEMIMPALENGRYNPMWSEREVSIEFLSSSTSSRSSPAPLYPQRVSPRILKPQKSSKYWTTPVYLNPAAETEFSLDENSLCSSSDSETESEEKDKNVALLEPRQSQTQEQMQTIFKESMGSPDYPMTDYDNPPPGSGKHTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKERNPNSVPPPCESPYEDTEAVVKTTIPSTSPNSVITQATFDGMISELRHAINNLYMSEILEESEMAVLQIEKLWRGVNLGVDIHSMLSKPPIINGFVEILLNSVEPQVLQAAVFLLAEMGSRDNAVIQTLTRVDTDVECIMALFKQGLTEAVVLLYLLNPSTVTLTEMAIVESLIRVFDRKEEDLVKMCLKPKTAAVLLLAQIIGSNEEMIASLVVKALFSEKAIGTIVSSLGAEWAEERIAAVEILLRCMEEDGTCRNIIADKAELSPILESFIGATDGERFKIVKFFSELIKLNSFPLVPSRRTFNEQILHIIKEEGHFSTMHTLLIHLQTALQDECPVMAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNTDFPATQLAAADTIMSLQGRFNFTGKPLTREVLLKRAGIDKSSRSLVQVDKINNFCPDQQVPEEEKAADDWERKIASVLVSHEFGILFEALADGMKSRYPELRSACFISATWLTYMLTILPDTGIQGAARVCLLKQFITKLNSARDVEDRILSMLALNSFLHFSDGIRDLTSYTKDILKGLRELKRSSPLASEMLKVLVDENESKADIWIHKELIQVDCRENGEVLSVICSKDKIFSGHTDGSIKVWTLKNGSFHLLQEIQEHSKAVTNLVISESGDRLYSGSLDRTTKVWSIGGAAVHCLQVHDMKDQIHNLVVTDSIACFIPQGTGVKVHSLNGESKLLNSNKYVKCLAHANGRLYCGCHDSSVQEIHLATGTVNTIQSGSKKLLGKAYPIHALQIHGELIYAAGSSLDGSAVKIWNNSNHSMVGSLQTGSEVRAMAVSSELIYLGCKGGAVEIWDKKKHGRVNTLQVGTQCRVTCMALDGNEEILVIGTSDGQIQVAMSTPIIVCAVRVDKLFSAETGKQKE 1380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00201 1380 Pfam WD domain, G-beta repeat 1112 1147 IPR001680 GO:0005515
Sebi20g00201 1380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 487 IPR013083 -
Sebi20g00201 1380 SUPERFAMILY WD40 repeat-like 1086 1354 IPR036322 GO:0005515
Sebi20g00201 1380 MobiDBLite consensus disorder prediction 345 413 - -
Sebi20g00201 1380 SMART WD40_4 1066 1103 IPR001680 GO:0005515
Sebi20g00201 1380 SMART WD40_4 1316 1356 IPR001680 GO:0005515
Sebi20g00201 1380 SMART WD40_4 1108 1147 IPR001680 GO:0005515
Sebi20g00201 1380 SMART WD40_4 1238 1274 IPR001680 GO:0005515
Sebi20g00201 1380 SMART WD40_4 1182 1225 IPR001680 GO:0005515
Sebi20g00201 1380 SMART WD40_4 1277 1313 IPR001680 GO:0005515
Sebi20g00201 1380 SUPERFAMILY RING/U-box 409 489 - -
Sebi20g00201 1380 Gene3D - 1041 1174 IPR015943 GO:0005515
Sebi20g00201 1380 ProSiteProfiles U-box domain profile. 411 486 IPR003613 GO:0004842|GO:0016567
Sebi20g00201 1380 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1115 1148 - -
Sebi20g00201 1380 Pfam U-box domain 413 483 IPR003613 GO:0004842|GO:0016567
Sebi20g00201 1380 CDD RING-Ubox_PUB 413 465 IPR045210 -
Sebi20g00201 1380 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 28 1355 - -
Sebi20g00201 1380 ProSiteProfiles Trp-Asp (WD) repeats profile. 1115 1148 IPR001680 GO:0005515
Sebi20g00201 1380 MobiDBLite consensus disorder prediction 371 388 - -
Sebi20g00201 1380 Gene3D - 539 764 IPR011989 -
Sebi20g00201 1380 SMART Ubox_2 415 479 IPR003613 GO:0004842|GO:0016567
Sebi20g00201 1380 Gene3D - 1175 1361 IPR015943 GO:0005515
Sebi20g00201 1380 SUPERFAMILY ARM repeat 570 1038 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00201 Sebi-Chr20 2102784 2111111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00201 407 479 U-box Gene Family AT1G23030 53.425 1.39e-17 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00201 - - gmx:100808867 2052.71