Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00172 ATGGCAGTATGGCACCCTAAGAAGAAATTAAGATGTTTGAAAATCTTGGCTGAAGTAGAAGTAGAACCCAGCTATTCGCTATTCACAATCACAAGTTGTAAAAACGGGAAGGAAACTGAGAGCGTAGGGGTAGCTGAGTTAGTAGCGGTAACCGTGCAACTGCAGAAGAAAACCCAAACCCTGCTTGCTTTCAAACAAGTGGAAATGGATTTAGAAGAGAAGTTCCTTGTTAAAGTTTCTGGTGTTCAAAGCCTTTCTTCTAGTGTGCAAAGTACTCCTGAAAAAAATGGTCATTCGGATGATGGTTCAAGAAGTTCAGAACTCCTTCAGGAGTTCCTGAAATGTGGTCCAAAGAAGGAACTTCTTCGAACTTGCTTTGATAAGGACAAAAAGAACATCTCATCAAAAAGCAAGATGATTCAAACTAAGTCAACTGGGGACTCTTGTGGGTTGTCTTGCCATATTGAATGTGCCCTTCAACATGGAAAAGTCGGAGTTGTTGATCATGGGCAACTGATGCAACTAGATGGTGGTTATTGCTGTGCATCCTGTGGTAAAGTAACAGGGATACTTGGATGCTGGAAGAAGCAACTAAATATAGCAAAAGATGCCCGGCGTGTTGATGTACTCTGTTATAGGATATATTTAAGCTACAAACTCTTGGATGGAACTTCAAAATTTAAAGACTTGCATCAAATGGTACAAGAGGCGAAGGCTAAACTGGAGGCAGAAGTTGGACCTGTTGATGGGGTTTCTGCCAACATGGCACGAGGCATTGTCAGCAGACTCCCTATTGCCAGTGATGTACAGAAACTCTGCTCTCTTGCGATTGAGAAAGCTGATAGCTGGCTTGCCACTCTCCCCACTGTAAATCCAGATTCCAGAGAGGGTTCGCTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCAGTCAAAATCATTTTAATTGAAATGTCAAATATATGTTCTGAGGACATCAAGGGGTACAAGCTCTGGTATTACAAGAGTCGGGAAGAATCACCCACAAAAGATCCTGTTTCTGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCAAACCTTCAGCCTTGCACAGAATATACTTTTCGAATTATATCTTATACTGATGCGGGTGACCTGGGTCATTCCGAGGCTAAGTGTTTCACCAAGAGCATCAACATAATTCACAACAATCCCTCTTCGTCTGTTGCTATGAATCATAAAAAAGAGAACCTTCAAAATGGGGGCAATTCTTCTGGCTGCAAGATGGAGCTCAATCCCACAGTGAAAGACTCTGGATTTAAGGTTCGTGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTCAAGAGCAAGGTTACTTTGAGGAGTTTTGCTGTGATGATAAGAAAAATTGTTGTGGACAAAGTGAAATGAACAAGCCTAAAATTCCAGAAACGCAGTTGCCTTCAGATTCACGAGGCCTTGATTTAAATGTTGCCTCAGTGCCTGATTTAAATGAAGAGATAACTCCTCCTTTTGAGTCTTCTAGGGATGAAGATAATGGTTGCACTTTGCTACAGGCTGTTGAGGCAGATGATGATGCTGCTTCTCATGATCTAGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGGTGACTCCCAAACCTGGCCCCATGGGCCAACAGGAGAAGTTTCAGCTGTTGACTCTCGCAGAAATGTCTGCAGGAAAAGGATAGCCAGCACAAACGAAGAGACACAGGATAGTGACAGCACTTTGATAAATGGTTCTCCTTTACGCATATCTGATGCTTCATGCTCCTTGGATGAGAGCTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATCAAACAGGAATTTAGATTGAAATTGCTAACATGGTTTAGTTTGAGGTCGACAGAGCAAGAACGCAGGGTGGTTAATACCTTTATTCAAACTCTTATCGACGATCCAGGAAGTTTGGCGGGGCAACTGGTTGACACCTTTTCTGATATTATATCCAGCAAGAGACCAAGAAATGGATTCTGTAGTAAAGCTGTGGCATCAAATTAA 2079 0.4218 MAVWHPKKKLRCLKILAEVEVEPSYSLFTITSCKNGKETESVGVAELVAVTVQLQKKTQTLLAFKQVEMDLEEKFLVKVSGVQSLSSSVQSTPEKNGHSDDGSRSSELLQEFLKCGPKKELLRTCFDKDKKNISSKSKMIQTKSTGDSCGLSCHIECALQHGKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYKLLDGTSKFKDLHQMVQEAKAKLEAEVGPVDGVSANMARGIVSRLPIASDVQKLCSLAIEKADSWLATLPTVNPDSREGSLPAACKFVFEEVTTSSVKIILIEMSNICSEDIKGYKLWYYKSREESPTKDPVSVFPKSQRRILISNLQPCTEYTFRIISYTDAGDLGHSEAKCFTKSINIIHNNPSSSVAMNHKKENLQNGGNSSGCKMELNPTVKDSGFKVRDLGKILRLAWAQEQGYFEEFCCDDKKNCCGQSEMNKPKIPETQLPSDSRGLDLNVASVPDLNEEITPPFESSRDEDNGCTLLQAVEADDDAASHDLEKNGLARSHGSGDSQTWPHGPTGEVSAVDSRRNVCRKRIASTNEETQDSDSTLINGSPLRISDASCSLDESFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPGSLAGQLVDTFSDIISSKRPRNGFCSKAVASN 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00172 692 ProSiteProfiles Fibronectin type-III domain profile. 299 398 IPR003961 GO:0005515
Sebi20g00172 692 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Sebi20g00172 692 PANTHER VIN3-LIKE PROTEIN 2-RELATED 144 687 IPR044514 GO:0010048|GO:0040029
Sebi20g00172 692 Pfam Fibronectin type III domain 305 385 IPR003961 GO:0005515
Sebi20g00172 692 CDD FN3 304 383 IPR003961 GO:0005515
Sebi20g00172 692 SUPERFAMILY Fibronectin type III 305 383 IPR036116 GO:0005515
Sebi20g00172 692 Gene3D Immunoglobulins 287 389 IPR013783 -
Sebi20g00172 692 MobiDBLite consensus disorder prediction 540 563 - -
Sebi20g00172 692 Pfam PHD - plant homeodomain finger protein 141 218 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00172 Sebi-Chr20 1831115 1838637 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00172 149 683 PHD Gene Family AT3G24440 47.715 4.53e-153 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00172 - - gmx:100816128 958.747