Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00151 ATGAGAAACTATTTGCAGTTTCTTTGGCCTCACATCTTGTGTTTCCTATTATTCATGAGTGTTGTACTTATACATCTAGTTGAAACAAAATCCACTATAGAACCATGTAGCTCTGCAGAATCATGCCCCTCTCTTCTCTCTTATCTCTTGCCTTGGGACTCCAAGCTCTCTGAAATTGCAACTCGTTTCAATGTAAATGTTTCTGATATCTTGGCTGCAAACTCTGTTTTCCCCATAACACCATCAAGTTCTCATAAAATCCTTTGTGCAAAATCATTAGTGAAAATACCAATTTCATGTCCTTGTGTGGATGGCATCAGAAGGTCTATGTCAACCAATTACACTGTTCAGGCAGCTGACACACTTGCCTCCATATCAGATGGGTATGGTGGGTTAGTTAGTGCTCAACAAATTGAGATTGTGAACAGCATCAATGATACAAACCCTTTGGCATATGGAAGCAACCTTGTTATACCATTGCCATGCACATGCTTGAACAATGTTAACAATGGGGAAACTGCAATTTATATGTCATATGTGGTGCAGACAGGGGAGAGCTTGGGAAGCATAGCAGCAGCATTTGGTACTACAATTTCAGATTTGGAAAATGCAAATGGACTTGGCCAAGCTAAAGTAGATCCAAGAGATATACTATCTGTTCCTATTGCAGCATGTTCATCAGCAACTCTGAAGTGGTACAATGAGAGTCTGATAGTCCCAAATGGATCTTATACTTTAACTGCCAGCAACTGCATCAAATGCACTTGTGCACCAAGGGATCTCAAGATGCAGTGTTTTCCATCTGGACTTGATGTCCCCTGCTATAATCTACATTGCAAAGGATCCAATCTTACAATTGGGGATGAATATGTGGAACATTCAAAAACTGGTTGCAATGTGAGCCAGTGTGTTTACCGTGGCCATAGGGGTGGCAAAATTCTGAGTAGTATGATGAACTCTTCTTACCTCCAGTGCCCGGGTGAGTTCTAG 990 0.4111 MRNYLQFLWPHILCFLLFMSVVLIHLVETKSTIEPCSSAESCPSLLSYLLPWDSKLSEIATRFNVNVSDILAANSVFPITPSSSHKILCAKSLVKIPISCPCVDGIRRSMSTNYTVQAADTLASISDGYGGLVSAQQIEIVNSINDTNPLAYGSNLVIPLPCTCLNNVNNGETAIYMSYVVQTGESLGSIAAAFGTTISDLENANGLGQAKVDPRDILSVPIAACSSATLKWYNESLIVPNGSYTLTASNCIKCTCAPRDLKMQCFPSGLDVPCYNLHCKGSNLTIGDEYVEHSKTGCNVSQCVYRGHRGGKILSSMMNSSYLQCPGEF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00151 329 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Sebi20g00151 329 ProSiteProfiles LysM domain profile. 112 158 IPR018392 -
Sebi20g00151 329 SUPERFAMILY LysM domain 177 221 IPR036779 -
Sebi20g00151 329 Gene3D LysM domain 169 231 IPR036779 -
Sebi20g00151 329 SMART LysM_2 113 159 IPR018392 -
Sebi20g00151 329 SMART LysM_2 178 221 IPR018392 -
Sebi20g00151 329 CDD LysM 178 207 IPR018392 -
Sebi20g00151 329 Gene3D LysM domain 108 168 IPR036779 -
Sebi20g00151 329 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 11 327 - -
Sebi20g00151 329 CDD LysM 114 158 IPR018392 -
Sebi20g00151 329 Pfam LysM domain 179 221 IPR018392 -
Sebi20g00151 329 Pfam LysM domain 56 80 IPR018392 -
Sebi20g00151 329 Pfam LysM domain 114 159 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00151 Sebi-Chr20 1552583 1555363 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00151 10 327 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 44.753 1.17e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00151 - - aprc:113855794 542.732