Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00150 ATGATCACAGACATGAAAGGTGCTGCAGGTGCCTTGGGAGGCAAGACAGCAAGAGCTTGTGATAGCTGCCTAAGGAGAAGAGCAAGGTGGTTTTGTGGAGCAGATGATGCTTTCCTCTGCCATGGCTGTGACACTTTGGTTCACTCTGCAAATCAATTAGCCAGCAGACATGAAAGGGTTAGGCTTCAAACTGCATCCTGTAAGGTAACTGCTCACACATGGCACAGTGGATTCACACGCAAAGCAAGAACCCCACGTCACAACAAGCAACACTTGGCACTTCAACAACGTCTCAAAGACCAAGTTCTTTTCAACAACACTAGTATTCTTCCCCTTGTTCCTGAGCTTGGAGTTGAAGAGCCTCTCATAGTGGATGATATTGAAGCTGAGGAGCAGCTTCTATGTCGTGTTCCTGTGTTTGACCCTTTTGATGCAGAGCCTTGCAATATATTGAGGGATGAGAGATTGGACATCACCATAAAAAAAGATGCTGCTGATGAAGAACAAGGAGAAGAAGCTTGTGACTTGGACAGTTTCTCTGAGTTTGATGTGGATCTTGCTGAGTTTGCAGCTAGTGTTGAAAGCCTACTTGGGAGTGGGGTTGATGAGGATAATTTAGGTGAGGTTTTTAATCATAAAGAAGAAAAAAATGAAATAATAGATGCATATGTAGGAGAGGTATCCAAAAGTGCAATGGTGAAAGTTAAGAATGAAGAAGAAGTTGATGCTGATGCTGATACAGTTTGTCATTTGGAGTCAGTTTTTGACATGACAAGTGAAGGTGCTTTTCATTGGAATAACATTGAGTCAGTGCTATCACCTGTACAGGAAGAGAAAGAGCCTATGGTGGCTAGTAATAGTGGTAGTGAAATAAGTAATAAAGAGGGAACAAAAAGAGACATATTTTTGAGACTAAACTATGATGAGGTTATTACTGCTTGGGCCAGCCAAGGTTCTCCATGGACAACTGGAAACCCTCCAAATTTCAACTCTGATGATGACTCTTGGCTAATCTGCTTGGGTTCTAGTGGTGCAGATGGGGAAGTAAGAAGCTTAAGGGGGCACCTTGTAGATGGGGGAAGAGAAGCAAGAGTTTCAAGGTACAGAGAGAAGAGAAGAACTCGTTTGTTTGCAAAGAAAATAAGATATGAAGTGAGGAAGTTGAATGCAGAGAAGAGACCTAGAATGAAAGGTCGTTTTGTCAAGAGGACATGCTTTGTTGGAGCCAATGCTTTTCCAAATTACCACTGA 1251 0.4253 MITDMKGAAGALGGKTARACDSCLRRRARWFCGADDAFLCHGCDTLVHSANQLASRHERVRLQTASCKVTAHTWHSGFTRKARTPRHNKQHLALQQRLKDQVLFNNTSILPLVPELGVEEPLIVDDIEAEEQLLCRVPVFDPFDAEPCNILRDERLDITIKKDAADEEQGEEACDLDSFSEFDVDLAEFAASVESLLGSGVDEDNLGEVFNHKEEKNEIIDAYVGEVSKSAMVKVKNEEEVDADADTVCHLESVFDMTSEGAFHWNNIESVLSPVQEEKEPMVASNSGSEISNKEGTKRDIFLRLNYDEVITAWASQGSPWTTGNPPNFNSDDDSWLICLGSSGADGEVRSLRGHLVDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPNYH 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00150 416 SMART bboxneu5 15 62 IPR000315 GO:0008270
Sebi20g00150 416 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 11 404 - -
Sebi20g00150 416 CDD Bbox1_BBX-like 19 62 - -
Sebi20g00150 416 ProSiteProfiles CCT domain profile. 361 403 IPR010402 GO:0005515
Sebi20g00150 416 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Sebi20g00150 416 Pfam CCT motif 361 403 IPR010402 GO:0005515
Sebi20g00150 416 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00150 Sebi-Chr20 1547221 1548597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00150 5 403 C2C2-CO-like Transcription Factor Family AT1G25440 43.721 7.71e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Sebi20g00150 zf-B_box 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00150 - - gmx:100812563 514.612