Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00141 ATGGCGACTCCTTTGGACGGAGGAGGAGGAGTAGCGCTGCTTTCGAATTCCATGAGCAAGGTCGATTCCTCATCGGCTCTCAATGGCGGTTTGAAGTGCTCCAAACTGGAGTCGCCAATTTTGATTTTCTTGTTCTTTCACAAGGCGATACGGAATGAGCTTGACGCCATGCACCGATTGGCTATGGCATTCGCCACCGGCAATCGCTCCGATATTCAGCCGCTCTTCGAACGCTACCATTTCCTCAGAGCGATTTATAGGCACCACTCCATTGCTGAAGATGAGGTTATTTTTCCAGCTCTGGATAAACGTGTGAAGAATGTAGCTAAAACATATTCTCTTGAGCACAAGGGTGAAAGCAATCTTTTTGACCATCTCTTTGACCTGTTAAATTCTTCCATCTGTAATGATGAAAGTTTTCCAAGAGAATTAGCATCTTGCACGGGAGCTTTGCGGACATCAATTAGTCAACACATGGAGAAGGAAGAGGAGCAGGTATTTCCTCTGCTTATTGAGAAGTTCTCTCTTGAGGAACAGGCATGTTTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTGAATACGATGGCAGAATTTCTTCCATGGCTTTCAACATCTATATCTCCTGATGAATCTGAGGATTTACGAAATTGCTTAAACAAGATAGTGCCAGAGGAAAAACTTCTTCAGAAGGTTGTTTTCACCTGGATGGAGGGGAGAAGTAGTGTTAGCACAGATGAAAGTGGTTTAGATAATTCTCAGCTTCAATATAATTTCAGCCCATTAAACCATCAGGTTGGGAAAGTAAACTGTGCGCGCGAGTCCACAACAACTGGAAAAAGGAAACATTCTGGATCCATGCTAGATGTTTCTGATGCCACTGGAACACATCCTATAGATGAAATACTGCTCTGGCATAATGCAATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAGACCAGAAAGATACAACACTCAGGAGATTTTACTAATATATCAGCTTTTAATGAAAGATTACAATTCATTGCTGAAGTTTGTATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGACGGGGAATTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGGTGTTTGATTGAAAGTATTCAAAGTGAAGGAGCATCATCTAATTCAGAAGTTGAATTTTATGCTAAGTTATGCTCACATGCTGATCATATAATGGACACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAAAAGGCAATGTGAACTTCTGTATCAAAGCTTATGCACGATGCCACTGAAATTGATTGAGCGTGTCCTGCCATGGTTGGTAGGATCTTTTACGGAAGATGAAGCAAAGATGTTTCTAAGAAACATGCAGTTGGCAGCTCCAGCAGCAGATTCTGCTCTAGTCACACTCTTCTCTGGTTGGGCTTGCAAGGCTCGTAATGAAGGTTTGTGTCTGTCTTCAGGCACATCGGGTTGCTGTCCTGCTCAAAGTCTTTCTGATATTGAAGAAAATATTGATTGGCCATCCTGTGCTTGTGCCTCTGCACCATCTATTAGACATTGCTCAGTACTAGCTGAATCAGATGGGAACAAAAGATCATTCAAGCGAAACATATTGGAGTTACACAAGAATGGAGATGTACCAGAAACTTCAGAGACTGAAAGTATTCAGAAAAATTGTTGTAGTGCTAGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAGCAGTAACAATTTGGGGCTGAGTTCTCTTTCTACAGCCAAGTCCTTACGCTCCTTATCTTTCAGCTCATCTGCCCCATCTCTTAATTCCAGCCTTTTTATATGGGAAACAGAGAGCAGCTCATGTGATATTGGCTCTACACAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGTTGAATGATGGTGATGAGACAATTCTTCGGCAATTTAGTGGAAGATTTCGTCTTTTATGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCAGCATTAGAATCCAAAGAGGCACTTCATAACGGTATGTGCAAATCCATTAGGGTGACCCTGGACCATCATCTTTTCAGGGAAGAATGTGAACTGTGGCCATTGTTTGGGAGACATTTCACTGTAGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACTTCTGCACTTACTCAGGATGAACAGAATAAAATGATGGATACATGGAAGCAAGCAACTAAGAACACTATGTTCAATGAATGGCTTAATGAATGCTGGAAAGAGACTCCAGCATCTATAGCACAAACAAAAACATCAGATCATAGCACTTCTCAAAGAGGTACTGAAAGTCAAGAAAGCTTGGACCACAATGATCAAATGTTCAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTTTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTACAGAATCTAATGACAAGTCGTTGGATAGCTGCCCAGCAGAAAATACCTAAAGCTCCATCTGAAGGTTCATCTAATGGGGTAGAGATAGAAGGACACTCACCATCATTTCGAGACCCAGGGAAACATGTATTTGGGTGTGACCACTATAAGAGAAATTGCAAACTTCGAGCTGCATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTGAGCGATCACTCGATGGATAGAAAAGCAACATCAGAAATGATGTGTATGCGCTGCCTGAATATACAGCCCATAGGGCCTATATGCATGACACCATCGTGTAACGGACTTTCAATGGCAAAGTACTATTGCAATATATGCAAATTTTTTGACGATGAAAGGAATGTATATCATTGCCCATTTTGCAATTTATGCCGTGTTGGACGAGGGCTTGGGATTGATTATTTCCATTGTATGAAATGCAATTGTTGCCTGGGGATTAAATCAGCATCTCATAAATGTCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGCTGTGATGACTTGTTCACATCAAGTGCTCCAGTCAGAGCTCTACCTTGTGGCCATTATATGCATTCTGCTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCTTATTGGCTGCTGAGGAGCTTCCTGAAGAGTATAGGGACCGCAATCAGGACATACTCTGCCATGACTGTGCTCGGAAGGGCACTTCACGCTTCCACTGGTTGTATCACAAATGTGGATTTTGTGGCTCTTACAATACTCGGGTGATCAAGTCTGAGAAATAA 3489 0.4142 MATPLDGGGGVALLSNSMSKVDSSSALNGGLKCSKLESPILIFLFFHKAIRNELDAMHRLAMAFATGNRSDIQPLFERYHFLRAIYRHHSIAEDEVIFPALDKRVKNVAKTYSLEHKGESNLFDHLFDLLNSSICNDESFPRELASCTGALRTSISQHMEKEEEQVFPLLIEKFSLEEQACLVWQFLCSIPVNTMAEFLPWLSTSISPDESEDLRNCLNKIVPEEKLLQKVVFTWMEGRSSVSTDESGLDNSQLQYNFSPLNHQVGKVNCARESTTTGKRKHSGSMLDVSDATGTHPIDEILLWHNAIKKELSEIAVETRKIQHSGDFTNISAFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRCLIESIQSEGASSNSEVEFYAKLCSHADHIMDTIQRHFHNEEVQVLPLARKHFSFKRQCELLYQSLCTMPLKLIERVLPWLVGSFTEDEAKMFLRNMQLAAPAADSALVTLFSGWACKARNEGLCLSSGTSGCCPAQSLSDIEENIDWPSCACASAPSIRHCSVLAESDGNKRSFKRNILELHKNGDVPETSETESIQKNCCSARSCCVPGLGVSSNNLGLSSLSTAKSLRSLSFSSSAPSLNSSLFIWETESSSCDIGSTQRPIDTIFKFHKAIRKDLEYLDVESGKLNDGDETILRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNGMCKSIRVTLDHHLFREECELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKETPASIAQTKTSDHSTSQRGTESQESLDHNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKIPKAPSEGSSNGVEIEGHSPSFRDPGKHVFGCDHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPIGPICMTPSCNGLSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSAPVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRNQDILCHDCARKGTSRFHWLYHKCGFCGSYNTRVIKSEK 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00141 1162 FunFam Zinc finger protein-related isoform 1 1047 1096 - -
Sebi20g00141 1162 Pfam CHY zinc finger 923 998 IPR008913 GO:0008270
Sebi20g00141 1162 SUPERFAMILY Zinc hairpin stack 989 1045 IPR037275 -
Sebi20g00141 1162 Gene3D nmb1532 protein domain like 37 187 - -
Sebi20g00141 1162 Gene3D nmb1532 protein domain like 299 446 - -
Sebi20g00141 1162 MobiDBLite consensus disorder prediction 811 836 - -
Sebi20g00141 1162 Gene3D nmb1532 protein domain like 641 723 - -
Sebi20g00141 1162 Gene3D - 1122 1162 - -
Sebi20g00141 1162 CDD Hr-like 42 168 - -
Sebi20g00141 1162 ProSiteProfiles Zinc finger CHY-type profile. 916 985 IPR008913 GO:0008270
Sebi20g00141 1162 SMART ring_2 1052 1093 IPR001841 -
Sebi20g00141 1162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1048 1096 IPR013083 -
Sebi20g00141 1162 ProSiteProfiles Zinc finger RING-type profile. 1052 1094 IPR001841 -
Sebi20g00141 1162 Pfam Zinc-ribbon 1099 1156 IPR039512 -
Sebi20g00141 1162 CDD Hr-like 647 738 - -
Sebi20g00141 1162 CDD Hr-like 299 428 - -
Sebi20g00141 1162 ProSiteProfiles Zinc finger CTCHY-type profile. 988 1051 IPR017921 -
Sebi20g00141 1162 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 688 1160 - -
Sebi20g00141 1162 Pfam Hemerythrin HHE cation binding domain 296 430 IPR012312 -
Sebi20g00141 1162 Pfam Hemerythrin HHE cation binding domain 44 170 IPR012312 -
Sebi20g00141 1162 SUPERFAMILY CHY zinc finger-like 918 979 IPR037274 GO:0008270
Sebi20g00141 1162 CDD RING-H2_Pirh2-like 1051 1094 - -
Sebi20g00141 1162 MobiDBLite consensus disorder prediction 811 829 - -
Sebi20g00141 1162 Pfam Ring finger domain 1051 1093 IPR001841 -
Sebi20g00141 1162 SUPERFAMILY RING/U-box 1049 1104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00141 Sebi-Chr20 1410860 1420249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00141 645 790 C2H2 Transcription Factor Family AT3G18290 26.374 4.38e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00141 K16276 - gmx:100801725 1934.84