Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00132 ATGGCCCTTAAGGCCAGCATGGACCAAGCCATTGAAGCCCACAAACAAGTCTCCACCATGGAATTGAATAATATTTTCAAGAACAACCATCGAGCCAAGTCAGCATGGGAAGATTGTTTGGAGCTGTATGAGGACACAATTCATCAACTCAACCGCTCAATCAGCTCAAACAATCTAAATGACAAGCTAACTTGGCAAAGTGCATCCATTGCCAACCATCAAACTTGCCACAATGGTTTCATTGACTTCAACCTTTCCTCTCACTTAAACTACTTCCCATTCATGTTAACCAATTTCTCCAAATTGCTTAGCAATTCCTTGTCTCTCAGCAAGACCATGGCTTTGGCTTCATCATCAACAACAACTAAACAAGTTGGTGGTCGAAGGTTGCTGCTTTCAGATGGTTTCCCTAATTGGCTATCTTCTTCCGATAGAAAGCTTCTTCAGACAGCACCAAAAGCTGATATTGTGGTGGCTCAAGATGACACTGGGAATTATAAGACAATCTCAGAAGGTGTGGCTGCAGCGGCTAAGCTTAGTGGAAAAGGGAGAGTTGTTATTCACGTAAAAGCAGGTGTTTACAAAGAGAGTATTGACATTAAGAGGTCAATGAAGAACTTGATGATCATTGGAGATGGAATGAGTTCCACTATTGTTACTGGTAATAATAATGCACAAGATGGCTCCACTACGTTTCGTTCGGCCACTTTTGCGGTTATGGGCGACGGATTCATCGCTCGAGACATGACCTTCGAGAACACGGCAGGGCCACAGAAGCACCAAGCGGTGGCTCTCCGTTCAGGCGCGGACCATTCGGTTTTCTACCGTTGCAGCTTCAAAGGTTACCAAGACACGTTATACGTCTACTCCCAACGGCAATTCTACCGTGATTGTGACATCTACGGCACCATTGACTTCATCTTCGGCGATTCCGTTACGGTCCTTCAGAACTGCAACATCTACGTGAGGAAACCGATGAGCAACCAGCAGAACACCGTAACCGCTCAGGGAAGAACGGATCCTAACGAGAACACCGGAATCGTCCTTCATAACTGCCGCGTAACCGCAGCAGGGGACATGAAAGCCGTTGAAGGATCCTTCAAGACGTTTCTAGGGAGGCCATGGCAGAAGTACTCGAGGACGGTGGTGATGAAGAGTAACTTGGATGGGTTGATTCATCCTTTAGGTTGGTCTCCTTGGAGTGGAAGCTTTGCGTTGAGCACACTGTATTACGGTGAGTATATGAACACAGGAGCAGGTGCTAATACTGCAGGGAGGGTGAAATGGGGAGGGTTTCGTGTGATAAAGGATCCTTCGGAGGCAGTGAAATTCTCGGTTGGTAATTTCTTGGCTGGAGACGCTTGGATTCCTGATAGTGGTGTGCCTTTTGACGCTTCTTTGTGA 1404 0.4658 MALKASMDQAIEAHKQVSTMELNNIFKNNHRAKSAWEDCLELYEDTIHQLNRSISSNNLNDKLTWQSASIANHQTCHNGFIDFNLSSHLNYFPFMLTNFSKLLSNSLSLSKTMALASSSTTTKQVGGRRLLLSDGFPNWLSSSDRKLLQTAPKADIVVAQDDTGNYKTISEGVAAAAKLSGKGRVVIHVKAGVYKESIDIKRSMKNLMIIGDGMSSTIVTGNNNAQDGSTTFRSATFAVMGDGFIARDMTFENTAGPQKHQAVALRSGADHSVFYRCSFKGYQDTLYVYSQRQFYRDCDIYGTIDFIFGDSVTVLQNCNIYVRKPMSNQQNTVTAQGRTDPNENTGIVLHNCRVTAAGDMKAVEGSFKTFLGRPWQKYSRTVVMKSNLDGLIHPLGWSPWSGSFALSTLYYGEYMNTGAGANTAGRVKWGGFRVIKDPSEAVKFSVGNFLAGDAWIPDSGVPFDASL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00132 467 Pfam Pectinesterase 155 453 IPR000070 GO:0030599|GO:0042545
Sebi20g00132 467 SUPERFAMILY Pectin lyase-like 150 464 IPR011050 -
Sebi20g00132 467 Gene3D - 150 467 IPR012334 -
Sebi20g00132 467 ProSitePatterns Pectinesterase signature 1. 181 200 IPR018040 -
Sebi20g00132 467 FunFam Pectinesterase 149 467 - -
Sebi20g00132 467 CDD PMEI-like_3 1 86 - -
Sebi20g00132 467 SMART PMEI_2 1 109 IPR006501 GO:0004857
Sebi20g00132 467 NCBIfam pectinesterase inhibitor domain 2 113 IPR006501 GO:0004857
Sebi20g00132 467 ProSitePatterns Pectinesterase signature 2. 300 309 IPR033131 -
Sebi20g00132 467 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 114 IPR035513 -
Sebi20g00132 467 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1 113 IPR035513 -
Sebi20g00132 467 Pfam Plant invertase/pectin methylesterase inhibitor 1 109 IPR006501 GO:0004857
Sebi20g00132 467 PANTHER PECTINESTERASE 2 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00132 Sebi-Chr20 1296142 1298135 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00132 1 467 Carbohydrate Esterase AT1G23200 54.545 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00132 - - lja:Lj4g3v3099630.1 770.385