Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00113 ATGGCAGACGTTGAGGTAGATGCTGCAGCAGCAGGGATTCCGAAGAAGAGAACATTCAAGAAGTTCAGCTTCAGAGGCGTTGATTTGGATGCGCTCCTCGACATGTCCACTGATGAGCTCGTCAAGCTCTTCAGTGCACGTGCTCGCAGAAGGTTCCAGAGAGGTCTCACCAGAAAGCCCATGGCCTTGATTAAGAAGCTCCGCAAAGCGAAAAGGGAAGCACCACCTGGTGAGAAGCCAGAACCAGTCCGCACTCACCTCCGTAACATGATTATTGTACCTGAGATGATTGGTAGCATTATTGGAGTTTACAACGGAAAGACTTTCAATCAGGTTGAAATCAAACCTGAGATGATTGGTCATTACCTTGCTGAGTTTTCAATTTCATACAAGCCTGTCAAGCACGGTAGACCTGGTATTGGTGCTACTCACTCATCCAGGTTCATTCCTCTCAAGTGA 459 0.4771 MADVEVDAAAAGIPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00113 152 FunFam 40S ribosomal protein S15 9 152 - -
Sebi20g00113 152 SUPERFAMILY Ribosomal protein S19 55 136 IPR023575 GO:0003735|GO:0005840|GO:0006412
Sebi20g00113 152 PRINTS Ribosomal protein S19 family signature 105 117 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sebi20g00113 152 PRINTS Ribosomal protein S19 family signature 117 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sebi20g00113 152 PRINTS Ribosomal protein S19 family signature 85 104 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sebi20g00113 152 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 10 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sebi20g00113 152 ProSitePatterns Ribosomal protein S19 signature. 105 129 IPR020934 GO:0003723
Sebi20g00113 152 NCBIfam 30S ribosomal protein S19 19 152 IPR005713 GO:0003735|GO:0006412|GO:0015935
Sebi20g00113 152 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 9 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sebi20g00113 152 Hamap 30S ribosomal protein S19 [rpsS]. 48 141 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sebi20g00113 152 Pfam Ribosomal protein S19 50 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sebi20g00113 152 Gene3D 30s Ribosomal Protein S19; Chain A 9 152 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00113 Sebi-Chr20 1123259 1124025 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00113 1 152 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 89.474 9.24e-95 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00113 K02958 - gmx:100499657 296.204