Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00109 ATGGCTACTTCGAAGGCGGTAATGTCTTCGTTGATCCACTCGCGTCCACTAACATGCGCCGCATCGGCATCAGCATCAGCATCACGAATAGTTCCCCATCCACCTGACCTCATCAAATGGGTTACCAGAGAAGGTGGCTTCGTGCACGGGGCGGTGAAGATAGCACAACTCGACTCCAACGGTCTCGGTCTCGGACTAGTGGCTAACCAAGAAATCCCAATGGGCACTGACCTTATTGTTCTTCCCCACCACATTCCCTTGCACTTTACCCCTCACGACTCTGTACTACTTGATTTGGCACGCCATGTTCCTGAGGAACTATGGGCAATGAAACTGGGTTTGAAGCTCCTGCAAGAAAGAGCAAAAGTTGGATCATTTTGGTGGCCATACATCAGCAATCTCCCAGAAACTTACAGCGTGCCTATCTTCTTTCCTGGGGAAGACATAAAGAACTTGCAGTATGCTCCTCTTCTTCACCAGGTAAACAAAAGATGCCGGTTTCTTCTTGATTTTGAGCAACAAGTCAAGCATGTTTTAGCCAGTCTTCCACCAGATAAGCATCCTTTTGGTGGCCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGAGCATTCCGGTTACATGGTAACAAGAATCCAAATGGGACAAACATGGACATACCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAACAAGATACCAGTAGCACAAAGATGCAAGTGAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCTTTATTACTTTGCTATGGCTGTTTAAGCAATGATCTTTTCCTTCTTGATTACGGATTTGTGATACACTCAAACCCCTATGACTGTATCGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTTCTTCACCTAACTTCTCAGCACCTGCACCCTGGCAGGACTTGATTTTATCTCAGCTAAATCTAGCTGGAGAAGCTCCAGATCTCAAGGTGAGCTTAGGTGGTCAAGAAATAATAGAGGGCCGCTTGTTGGCTGCATTAAGAGTACTCCTTGCAAGTGATATGGAAACTGTAAAAAAGTATGACCTCAGCACGCTCAAGTCTTTCCATGCTGAGGCTCCTCTTGGTGTTGCAAATGATATTAATGTATTTCGTACCCTAATTGCTCTGTGTGTCATTGCACTGGGACACTTTCCCACCAAAATGATGGATGATGAATCACTTTTGAAGCAGGGTGCTTCAGGTTCAACTGAGTTAGCCATTCAGTTCAGAATCCAAAAGAAATCTGTAATTATAGATGTGATGAGAAATCTCACAAGGAGGGTAAAGCTTCTCTCATCAAAGGAAACAGAAACTGCCGAAGGCTAA 1422 0.4473 MATSKAVMSSLIHSRPLTCAASASASASRIVPHPPDLIKWVTREGGFVHGAVKIAQLDSNGLGLGLVANQEIPMGTDLIVLPHHIPLHFTPHDSVLLDLARHVPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETYSVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFEQQVKHVLASLPPDKHPFGGQEVDASSLGWAMSAVSSRAFRLHGNKNPNGTNMDIPMMLPLIDMCNHSFNPNARIVQEQDTSSTKMQVKVVAETAIKEDDPLLLCYGCLSNDLFLLDYGFVIHSNPYDCIELKYDGALLDAASMAAGVSSPNFSAPAPWQDLILSQLNLAGEAPDLKVSLGGQEIIEGRLLAALRVLLASDMETVKKYDLSTLKSFHAEAPLGVANDINVFRTLIALCVIALGHFPTKMMDDESLLKQGASGSTELAIQFRIQKKSVIIDVMRNLTRRVKLLSSKETETAEG 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00109 473 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 288 467 IPR036464 -
Sebi20g00109 473 SUPERFAMILY SET domain 32 296 IPR046341 -
Sebi20g00109 473 Pfam SET domain 63 278 IPR001214 GO:0005515
Sebi20g00109 473 Pfam Rubisco LSMT substrate-binding 328 448 IPR015353 -
Sebi20g00109 473 FunFam Histone-lysine N-methyltransferase setd3 3 291 - -
Sebi20g00109 473 FunFam SET domain containing protein 314 467 - -
Sebi20g00109 473 ProSiteProfiles SET domain profile. 52 278 IPR001214 GO:0005515
Sebi20g00109 473 SMART set_7 50 284 IPR001214 GO:0005515
Sebi20g00109 473 Gene3D - 329 471 IPR036464 -
Sebi20g00109 473 CDD SET_LSMT 51 292 - -
Sebi20g00109 473 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 32 438 - -
Sebi20g00109 473 Gene3D set domain protein methyltransferase, domain 1 7 291 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi20g00109 SET 8.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00109 - - gmx:100778387 777.704