Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00097 ATGCCTTCTGTGACATGGGGTGTCATTCAAGGTCGCAAAGAGAAGCTCGTTTCGCGTGTAATCATCTTCGACTACCTCAAGGGTTTGGGAATCATCCCTGATGAGTTGCAGGACTTGGAGCTTCCTTCCACCGTTGATGTCATGAGGGAGCGCGTCGAGTTTCTTCAAAAGTTAGGTTTGACCGTTGACGACATGAACGAGTACCCTTTGATGCTGGGATGCAGTGTGAGAAAGAACATGATTCCTGTGTTGGGGTACTTGGAAAAAATTGGGATTCCAAGGTCCAAGCTTGGCGAGTTTGTTAAGAATTACCCACAAGTTTTGCATGCTAGTGTCATTGTTGAGCTTGCTCCTGTTATCAAGTTCCTTAGAGGTCTTGATGTGGAGAAAGGGGATATTGGGTATGTGCTGCAAAAGTATCCTGAACTTCTTGGGTTCAAGCTTGAAGGTACTATGAGCACTTCAGTGGCTTATCTTGTTAGTATTGGTGTCAATCCTAGAGATATTGGTCCAATGGTTACACAGTATCCTTATTTATTAGGGATGAGAGTTGGGACTGTGATAAAGCCTCTGATTGATTACTTGCACACTTTGGGGCTGCCAAAGAAGATTTTAGCTAGGATGTTGGAGAAAAGAGCCTATATACTTGGGTATGATCTTGAAGAGACCGTGAAACCAAATGTGGATTGTTTGATCAGTTTTGGTATAAGGAAGGAGTGTTTGCCTTCGGTTATTGCTCAATATCCCCAGATCCTTGGGCTACCTCTTAAGGCTAAATTATCTTCACAGCAATACTTTTTCAGTTTGAAGCTTAAGATTGACCCTGAAGGGTTTGCACGAGTGGTGGAGAAGATGCCACAAGTGGTTAGCCTTCACCAAAATGTGATTATGAAGCCAGTTGAGTTCCTTCTTGGTAGGACAATACCATCACAAGATGTGGCTTCTATGGTGATAAAGTGTCCTCAGTTAGTTGCACTGCGAGTTGAGCTCATGAAGAACAGTTATTTCTTCTTCAAGAGTGAGATGGGGAGACCCATGAAAGAGCTTGTGGAGTTCCCAGAATACTTTACTTATAGTTTGGAATCCAGGATCAAACCCAGATACCAGCGGCTAAAGAGCAAGGGGATAAGGTGTTCATTGAATTGGATGCTAAATTGTAGTGACCAGAGATTTGAAGAGAGATTACAGGGTAATTACATTGAAACTGAAAGTATAGGTCCATCATTCTGTCTGGGTGGGAAATTAGAACTGCCAGGGAATGCCATAATGTCAGATGAGGAAGAGGAGAGTGATGATGAAATGCTATACAGACGAACTGTTTCTCTTTAG 1329 0.4289 MPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELQDLELPSTVDVMRERVEFLQKLGLTVDDMNEYPLMLGCSVRKNMIPVLGYLEKIGIPRSKLGEFVKNYPQVLHASVIVELAPVIKFLRGLDVEKGDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTVIKPLIDYLHTLGLPKKILARMLEKRAYILGYDLEETVKPNVDCLISFGIRKECLPSVIAQYPQILGLPLKAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRTIPSQDVASMVIKCPQLVALRVELMKNSYFFFKSEMGRPMKELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGNYIETESIGPSFCLGGKLELPGNAIMSDEEEESDDEMLYRRTVSL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00097 442 PANTHER CGI-12 PROTEIN-RELATED 83 215 IPR003690 GO:0003690|GO:0006355
Sebi20g00097 442 SMART mt_12 62 93 IPR003690 GO:0003690|GO:0006355
Sebi20g00097 442 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Sebi20g00097 442 SMART mt_12 242 274 IPR003690 GO:0003690|GO:0006355
Sebi20g00097 442 SMART mt_12 170 201 IPR003690 GO:0003690|GO:0006355
Sebi20g00097 442 SMART mt_12 206 237 IPR003690 GO:0003690|GO:0006355
Sebi20g00097 442 SMART mt_12 314 345 IPR003690 GO:0003690|GO:0006355
Sebi20g00097 442 SMART mt_12 279 309 IPR003690 GO:0003690|GO:0006355
Sebi20g00097 442 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Sebi20g00097 442 SMART mt_12 346 377 IPR003690 GO:0003690|GO:0006355
Sebi20g00097 442 FunFam Transcription termination factor MTERF4, chloroplastic 186 400 - -
Sebi20g00097 442 Pfam mTERF 84 392 IPR003690 GO:0003690|GO:0006355
Sebi20g00097 442 Gene3D Transcription termination factor 3, mitochondrial 49 187 IPR038538 -
Sebi20g00097 442 Gene3D Transcription termination factor 3, mitochondrial 188 402 IPR038538 -
Sebi20g00097 442 FunFam Transcription termination factor mterf4, chloroplastic 48 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00097 Sebi-Chr20 978932 980260 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Sebi20g00097 mTERF 5.2e-108 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00097 K15031 - gmx:100809590 813.142