Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00094 ATGGCCAATTTACAAATCACCACCGAGAATGTGGTTCCTGATCAATTCCCGGCTGGTCTCAGTGTTCTTGCGGTTGATAATGACAACACTATTCTTAAACTCATTGAGCAATTATGTATTCGATTCAATTATCAAGTTACCACATGCTCTGAGGTTCAAGTTGCCATGAATCTTTTGAGGGAAAGAAAGGGTTCTTTTGATGTGATACTAATTGATGTTCACATGCCAGACATGGATGCCTATGAATTCCTTCAGCATGTTACCCAAGAATTGAATCTTCCTGTTATTATGATGTCTGTTGATGCATCAGCAAGTGATGTCATGAAGGCAATTAGATATGGAGCTTGTGATTATTGGATTAAGCCTTTGCAGGAGCAACAGTTCAAGAATATGTGGCAGCATTATGTAAGGAATGCCTTGAAACAAAATAATCAAGGACACAAATTTAGCAACTTAGAAGATGCAGATGATGATGAGAAAAAACAGAGGAAAGCTGATTCTGAATTTGCTTCTCATGTTGTTGATGCAACTGAAGCAATTTTTAATTCCCCACAAGAGGGCACTTCAAAAGAAGCTGATGCTTATGAATCGGATAATCTTTATCAACGCGCAACAAAGAAGCCCCGTATAGTATGGACAAAAGAACTGCATCAACGATTTGTCAGGGCTGTGATGCAGTTGGGAATTGATAAGGCTGTGCCAAAGAAAATTCTTCAAGTGATGAATGTTCCTGGTTTGACAAGAGAGAATGTTGCTAGTCATTTGCAGAAATTTAGACTTTACATGAGGAAAACTGTCCCTGGGATTATAAACCCCAAGTTTGGTGCATATGGAGGATTTGACTTTGAAGCACTGGCTGGCCTCAGAGACAACTCAATTTCAAAAGAAGACCAAAGTGCCCTATTGATGTCATCCTTGGAGTGGCCCCCAAACTCTTCCCATGCTATGAACATTGCCAAGAATTTTCCTCCATCAAGATATGGAACATGGCCTCCATCTAATGCAATTGGTTCAGTTGGAGTCAATAATAATAATAATGTGCTGATGAATGCATTATTAATGCAGCAACAGCAACAGCAATGGCAGGAATTAGCGATGAAACAGGATCAAATTCATTCAATGAATGTTCAACCATCTTACACCACAGGTAGAGGCATTTTCTTAGGAAATGCTCCTCCAACCTCCATTTCTCATCCAATATTCTCTTGTTCAATAACTCCACAGCTTCCAAACTCAACTTTCACAATTGCTTTGAGATCTTCTCCTGTGTCACATACACAAGTTCCCTATGGTGATTCACCATCCATCCCAAGTGGGTCTGCTGAACTTGAAATGGAATCATCTTTGATTGGAAAATTGTCCACGGATAAGGAGAAGGAGTTAAAATCTATTAGTCCACAAGAGGATCATGACCCATTCTCATGA 1425 0.3965 MANLQITTENVVPDQFPAGLSVLAVDNDNTILKLIEQLCIRFNYQVTTCSEVQVAMNLLRERKGSFDVILIDVHMPDMDAYEFLQHVTQELNLPVIMMSVDASASDVMKAIRYGACDYWIKPLQEQQFKNMWQHYVRNALKQNNQGHKFSNLEDADDDEKKQRKADSEFASHVVDATEAIFNSPQEGTSKEADAYESDNLYQRATKKPRIVWTKELHQRFVRAVMQLGIDKAVPKKILQVMNVPGLTRENVASHLQKFRLYMRKTVPGIINPKFGAYGGFDFEALAGLRDNSISKEDQSALLMSSLEWPPNSSHAMNIAKNFPPSRYGTWPPSNAIGSVGVNNNNNVLMNALLMQQQQQQWQELAMKQDQIHSMNVQPSYTTGRGIFLGNAPPTSISHPIFSCSITPQLPNSTFTIALRSSPVSHTQVPYGDSPSIPSGSAELEMESSLIGKLSTDKEKELKSISPQEDHDPFS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00094 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 266 IPR017930 -
Sebi20g00094 474 Gene3D - 203 265 - -
Sebi20g00094 474 Pfam Response regulator receiver domain 22 130 IPR001789 GO:0000160
Sebi20g00094 474 SUPERFAMILY Homeodomain-like 205 264 IPR009057 -
Sebi20g00094 474 SMART REC_2 20 132 IPR001789 GO:0000160
Sebi20g00094 474 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Sebi20g00094 474 MobiDBLite consensus disorder prediction 146 168 - -
Sebi20g00094 474 SUPERFAMILY CheY-like 19 144 IPR011006 -
Sebi20g00094 474 MobiDBLite consensus disorder prediction 451 474 - -
Sebi20g00094 474 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Sebi20g00094 474 MobiDBLite consensus disorder prediction 424 474 - -
Sebi20g00094 474 Pfam Myb-like DNA-binding domain 212 257 IPR001005 -
Sebi20g00094 474 FunFam Two-component response regulator 203 265 - -
Sebi20g00094 474 Gene3D - 20 154 - -
Sebi20g00094 474 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 353 IPR045279 GO:0009736
Sebi20g00094 474 MobiDBLite consensus disorder prediction 150 168 - -
Sebi20g00094 474 CDD REC_typeB_ARR-like 22 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00094 Sebi-Chr20 948569 950800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00094 14 271 Response Regulator Gene Family AT2G25180 44.403 7.55e-67 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Sebi20g00094 Response_reg 7.1e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00094 - K14491 aprc:113871558 335.495