Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00090 ATGGTGAAATCGAGCAACAATGGTTCTGGTTCTGGTTCAGTGCCTCCTTTCCTGAACAAGTGTTACGACATGGTGGAAGACCATTCCACCGACTCCATCATCTCTTGGACCCAAGGCGGTGACAGTTTTCTCATCTCCGATGTCACTCAATTCTCCATCACACTTCTCCCTAACTATTTCAAACACAACAATTTCTCCAGCTTCATCAGGCAACTCAATATCTATGTTGAAGTGAGTCTCTTTCAAAAGTCAGTGATTGATAACTGTAGAATCTATCAGGGTTTCAGGAAAATTGATACAGATAGCTGGGAATTTGCCAATGAGAACTTTGTTAGGGGTCAAAAGCATTTGTTGAAGAATATACGTAGAAGGAAACATCCACATGTTGCAGATCAGCAAAAAGCATTGCCGCAGCAAGACAATTGTGAGGAACCTTTAGAAGAAGCACCAAATCATGGCCTTTGGAAAGAAGTTGAGAACCTTAAATCAGATAAAAATTCTCTCATGCAGGAGTTGGTCAAACTTGGGCAACACCTGGAATCTGCTGAGAATAAGCTGCTCCTCCTGAGTGACCGCCTTCAAGGAATGGAGAAGCATCAACAGCAGATGTTGTCATTCTTAGTCATGGTTGTGCAAAGCCCTGGGTTCATGGTTCAGCTGCTTCAGCCAAAGGATAATAACTGGCGTTTGGCTGAAACAGGGAATATGCTAGACCAAGGTAAACAGGATGACAAACCAGTTACTTCGGATGGGATGATTATAAAGTATAAACCACCTGTAGGTGAAAAACTAAAGCCTGCAGGTCCACTATCTCCTGGTTTCAATAAGCAGCAACCAGAACCTGAGTTTTCTTTAGATGGGCTAAAAGACTTGTGCATCAGTTCTGATTTCCTGAAAGTCCTTCTGGATGAAAAATTGTGTCCGCTAGATAATCATTCTCCATTTCTTCTACCAGATTTACCTGATGATGGTTCATGGGAACAGCTTTTTGTGAATAGTCCTTTCCTCGGAAACATTGAAGATACTGATCATGAAAATGAGGGGTCCACTGTTAATGGAATGGAGATGGAACCCGCTATATCTGAAACTCCAAATGAAAAATCTCTGACATTTGAATCAATGATTGTAGAAATGGAGAAAACTCAAGTGTGA 1152 0.4158 MVKSSNNGSGSGSVPPFLNKCYDMVEDHSTDSIISWTQGGDSFLISDVTQFSITLLPNYFKHNNFSSFIRQLNIYVEVSLFQKSVIDNCRIYQGFRKIDTDSWEFANENFVRGQKHLLKNIRRRKHPHVADQQKALPQQDNCEEPLEEAPNHGLWKEVENLKSDKNSLMQELVKLGQHLESAENKLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLQPKDNNWRLAETGNMLDQGKQDDKPVTSDGMIIKYKPPVGEKLKPAGPLSPGFNKQQPEPEFSLDGLKDLCISSDFLKVLLDEKLCPLDNHSPFLLPDLPDDGSWEQLFVNSPFLGNIEDTDHENEGSTVNGMEMEPAISETPNEKSLTFESMIVEMEKTQV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00090 383 Gene3D - 10 125 IPR036388 -
Sebi20g00090 383 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi20g00090 383 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi20g00090 383 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi20g00090 383 Coils Coil 158 199 - -
Sebi20g00090 383 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 239 IPR027725 -
Sebi20g00090 383 FunFam Heat stress transcription factor B-4 9 125 - -
Sebi20g00090 383 Pfam HSF-type DNA-binding 17 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi20g00090 383 SMART hsfneu3 13 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi20g00090 383 SUPERFAMILY "Winged helix" DNA-binding domain 13 124 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00090 Sebi-Chr20 863125 865105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00090 1 334 HSF AT1G67970 46.176 7.88e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi20g00090 HSF_DNA-bind 3.7e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00090 K09419 - gmx:100813694 614.379