Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00088 ATGTGCCAAATCAAAGAAGTTCAACTACATGCAGGAACTTTTAAAATGATGCATAATCTGAGAATTCTCCAGTTCTATAAGTCCAAATCAACTGAAAAATCAAAAGTGCATATTCCTTCATTTCTTGAAAGTCTTCCGGATGCTTTACAATTTCTCTGTTGGGATGGCTTCCCTCAAAGATCACTGCCTCTGGACTTTCTCCCAGCAAATCTTGTTAAACTTGATATGCATAACAGTCAACTTGAACAACTTTGGGAGAGAGATCAGCATTTGCCCAATTTGAAAAGGCTTGATCTTAGTGGATCTAAGAGCTTGGTTCAAATACCAGACCTTTCTCAATCCCCAAATATTGAAGAAATCATTCTTAGTCATTGTGTGAGTTTGGTTCAAGTTTACTCCTCAAGTTTCCTCAAGAAGCTCAACTGTTTATGGTTAAATGGTTGCATTGAGCTTAGAAGTTTAAATCTTGCTAGCAATATCCTTTCAAAATCTTCTGGACTAATAGTCCTCTATGATTGTTGCAACCTTGAGATGTTTTCAATCAATAATATCACCATAGGGGCTCAGTTATATGGTTGTTCCCGAAGTAGATCAATTGAGAGTATATTCAGGAATAGTTTGCCTGGGGAAATATTTAGTTGTTTTAGAGATACAAGACCAAGGTCCCTATTTGAGAAATTCTCAGATACTTTTGACCCCATGGATAGTGATGACTTAGATGAAAAACAAGAGGCAATTAAGGAAATACCTTCATCATTGGAGTATTTGGTTGGGCTTCAAACCTTGCGCCTGAACTTGTGCAAAGAGCTAGAATTTCTTCCAAACAGCATTGGTAATGTAACACTTCTCACCAAGCTTGATTTTTCAGGATGTGATAAATTATCAGAAATCCCAAGTGACATTGGCCACTTGTCATCACTCAGAGAACTGTCACTGCATGAAAGTGGTGTTGTTAACCTTCCTGATAGTATTGCTCATCTGTCAAGCTTGAAATCACTTGATTTAAGTGATTGCAAAAGGCTTGAATTTATCCCTGAGCTTCCACCATTTCTAGAACACTTGTTGGCATTTGATTGTCCTTCTATTAGAAGGGTGTCAAGTTCAAGGTTTCAAATTTTATCAGATTCCAAAGAGGGTGTCTTCAAGTTTCATCTCACCAATAGTCAAGAACTTGATCCAAGTGCTCAAAGTAACCTTGTGACTGATGCATCACTTAGGATCACTGATGATGCATATAGATTCACATTTGAATCAGATGATGGCATACACATTATTCCTAGCAATGATCAGCTAAGATACTATTTCAATTGGAAGGGTCGACAGAGATTTATTGTCCATGATCATACATTTCTCTGGAAATATTATTTGGATTCTTCAAGCATCACCCAAATGCTCTCCCATGCCCACAACTTCACTTTTGAGATATGCAAGTATGATGTTGGTAGCTTTTGGCCAAATTATAGACCCACTTTCAAGGTAAAAGAATGTGGAATATCTCCTCTTTATGCAAAAGATCGATAA 1521 0.3728 MCQIKEVQLHAGTFKMMHNLRILQFYKSKSTEKSKVHIPSFLESLPDALQFLCWDGFPQRSLPLDFLPANLVKLDMHNSQLEQLWERDQHLPNLKRLDLSGSKSLVQIPDLSQSPNIEEIILSHCVSLVQVYSSSFLKKLNCLWLNGCIELRSLNLASNILSKSSGLIVLYDCCNLEMFSINNITIGAQLYGCSRSRSIESIFRNSLPGEIFSCFRDTRPRSLFEKFSDTFDPMDSDDLDEKQEAIKEIPSSLEYLVGLQTLRLNLCKELEFLPNSIGNVTLLTKLDFSGCDKLSEIPSDIGHLSSLRELSLHESGVVNLPDSIAHLSSLKSLDLSDCKRLEFIPELPPFLEHLLAFDCPSIRRVSSSRFQILSDSKEGVFKFHLTNSQELDPSAQSNLVTDASLRITDDAYRFTFESDDGIHIIPSNDQLRYYFNWKGRQRFIVHDHTFLWKYYLDSSSITQMLSHAHNFTFEICKYDVGSFWPNYRPTFKVKECGISPLYAKDR 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00088 506 ProSiteProfiles Leucine-rich repeat profile. 150 171 IPR001611 GO:0005515
Sebi20g00088 506 SUPERFAMILY L domain-like 49 366 - -
Sebi20g00088 506 Gene3D Ribonuclease Inhibitor 238 398 IPR032675 -
Sebi20g00088 506 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 178 IPR044974 GO:0006952
Sebi20g00088 506 Gene3D Ribonuclease Inhibitor 2 219 IPR032675 -
Sebi20g00088 506 Pfam Leucine Rich Repeat 70 89 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00088 Sebi-Chr20 854790 857164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00088 13 340 WRKY Transcription Factor Family AT4G12020 32.047 3.97e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00088 - - aip:107633930 393.275