Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00074 ATGAATGGAAAGTGTGAGACTTTTCGAAATGGAGGATCTGATGAAGTTGTGCACATATCTAATGGTTATAATTTGAAAACCCTAAGTGGATGTGAAGCAGCTGATGAACGGAATAGCTGGGATAATTTTAAGCATCTAATTGTCGATGAAGAATTTTTCTTTGATGCTTCAATTAAAAAGTCAGCCTCTAGTGAATCTTATGAGCAAGTCACCTTGATGGTCTGTGTGGAGGATACTGGAATTGGAATTCCTTTCTCAGCCCAAGATAGGATTTTTATGCCTTTTGTGCAGGCAGACAGCTCAACCTCTCGAAACTATGGTGGTACCGGCATTGGCTTGAGTATCAGTAAGTGCCTGGTTGAACTAATGGGTGGTCAGATAAATTTCATAAGCAGACCACAGGTTGGGAGCACATTTTCATTTACTGCAGATTTTGGAACTTTTAAGAAGAATCCAATAACTGATGTGAAGAAACTTAATTTGGAAGATCTACCTTCTAGTTTTAGAGGGCTTAAAGCTATTGTAGTGGATGGAAAACCTGTTAGAGCTGCTGTGACTAGATATCATTTGAAGAGACTAGGAATACAAGCTAAAGTTGCAAATAGCATCAACAAGGCTGTATCTTTGTGTGGGAAAAATGGCTCTTTGACCGCAGGATTATATCAGCCTGATATTATTTTTGTTGAGAAGGATTCGTGGGTTTGTGGAGAGGATGGGATCTTCAATTTGTGGCAACTGGACTGGAAACAGAATGGACACATGTTTAAGATGCCTCAAATGATCCTTCTTGCAACCAATATTAGTAAAATTGAATTTGATAAAGCTAAAGCTGCAGGTTTCAGTGATACAGTTATCATGAAGCCACTGAGAGCTAGTATGGTGGCTGCTTGTCTTCAGCAAGTTCTGGGGACGGGGAAGAAGAGGCAGCTTGGGAAAGACATGCCTAATGGTTCCAGTTCAGTAAGAAGCCTTCTTTGTGGCAAGAAAATCTTAGTGGTTGATGACAATATGGATGATGGAGAGGAAGGAAATGAGCAGATGAAGAGTGAATGTAGTGAAGGAAATGGCAGGAAAAGTGAGTTCCACATACCAATATTGGCCATGACAGCTGATGTAATCCATGCTACATATGAGGAGTGCTTGAAATGTGGGATGGATGGATATGTGTCAAAGCCTTTTGAGGAAGAGAATCTGTATCAAGCAGTTGCAAAGTTTTTCAAGGCCAACCCAACCTCAGACTCATGA 1245 0.4048 MNGKCETFRNGGSDEVVHISNGYNLKTLSGCEAADERNSWDNFKHLIVDEEFFFDASIKKSASSESYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGTFKKNPITDVKKLNLEDLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSINKAVSLCGKNGSLTAGLYQPDIIFVEKDSWVCGEDGIFNLWQLDWKQNGHMFKMPQMILLATNISKIEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQLGKDMPNGSSSVRSLLCGKKILVVDDNMDDGEEGNEQMKSECSEGNGRKSEFHIPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFKANPTSDS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00074 414 SMART HKATPase_4 38 147 IPR003594 -
Sebi20g00074 414 PANTHER TWO-COMPONENT HISTIDINE KINASE 352 403 - -
Sebi20g00074 414 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 67 169 IPR036890 -
Sebi20g00074 414 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 69 145 IPR003594 -
Sebi20g00074 414 ProSiteProfiles Response regulatory domain profile. 172 406 IPR001789 GO:0000160
Sebi20g00074 414 CDD HATPase_EvgS-ArcB-TorS-like 57 145 - -
Sebi20g00074 414 SUPERFAMILY CheY-like 168 303 IPR011006 -
Sebi20g00074 414 ProSiteProfiles Histidine kinase domain profile. 72 147 IPR005467 -
Sebi20g00074 414 Gene3D - 33 149 IPR036890 -
Sebi20g00074 414 PRINTS Bacterial sensor protein C-terminal signature 72 86 IPR004358 GO:0016310|GO:0016772
Sebi20g00074 414 PRINTS Bacterial sensor protein C-terminal signature 107 125 IPR004358 GO:0016310|GO:0016772
Sebi20g00074 414 PRINTS Bacterial sensor protein C-terminal signature 90 100 IPR004358 GO:0016310|GO:0016772
Sebi20g00074 414 PRINTS Bacterial sensor protein C-terminal signature 131 144 IPR004358 GO:0016310|GO:0016772
Sebi20g00074 414 SUPERFAMILY CheY-like 327 407 IPR011006 -
Sebi20g00074 414 Gene3D - 339 410 - -
Sebi20g00074 414 Gene3D - 166 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00074 Sebi-Chr20 717419 719575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00074 10 414 Histidine Kinase Gene Family AT2G01830 53.996 1.10e-144 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi20g00074 HATPase_c 6.5e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00074 K14489 - gmx:100818481 661.759