Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00048 ATGGATACAAATGAGGAGGAGAGGATAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAGACTGAGACAACAAGGTTCACCATTTTGGATGCACCTGGTCACAAAAGCTATGTTCCTAATATGATCAGTGGTGCTTCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAACATGTCCAGCTTGCAAAAACACTGGGTGTGGCGAAGCTACTTGTTGTTGTCAATAAAATGGATGATCCTACAGTAAACTGGTCAAAAGAAAGATATGATGAAATTGAGTCAAAGATGATTCCGTTTCTAAAGCAATCAGGCTACAATGTAAAGAAAGATGTCCTGTTTTTACCAATATCGGGGCTTGTTGGCTTGAACATGAAAACGAGATTGGATAAAAGCACTTGTTCATGGTGGGATGGGCCTTGCTTATTTGAAGCCCTTGATGCCGTTGAAGTTCCTTTACGAGATCCCAAAGGTCCATTTAGGATGCCCCTACTTGACAAATTCAAAGACATGGGAACTGTTGTCATGGGCAAAGTGGAATCTGGTACTATTCGCGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCATGTAAAAGTCATTGCTATATATATTGATGAAGATCGGGTTAAACGTGCTGGACCTGGTGAAAATTTACGGGTTAGAATATCTGGTGTTGAAGAAGAAGACATATTATCTGGGTTTATCCTGTGTAGTGTTGCAAATCCAATACCCGCAGTTACTGAGTTTGTTGCTCAGTTGGCAATCCTTGAATTGCTGGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAGCTCTTGCAACAAATTGATCCAAAGACAAGGAAGCCTATGAAAAAGAAAATTCTCTTCGTGAAGAATGGCGCTGTTGTAGTATGCCGTGTTCAGGTTAATAACATGATATGCATTGAGAAGTTCTCTGATTTTCCACAACTAGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTCGCTGTGGGGAAAGTCACTGGTCTGTGA 1119 0.4173 MDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDDPTVNWSKERYDEIESKMIPFLKQSGYNVKKDVLFLPISGLVGLNMKTRLDKSTCSWWDGPCLFEALDAVEVPLRDPKGPFRMPLLDKFKDMGTVVMGKVESGTIREGDSLLVMPNKDHVKVIAIYIDEDRVKRAGPGENLRVRISGVEEEDILSGFILCSVANPIPAVTEFVAQLAILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDPKTRKPMKKKILFVKNGAVVVCRVQVNNMICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00048 372 Gene3D Translation factors 265 372 - -
Sebi20g00048 372 Pfam Elongation factor Tu C-terminal domain 263 371 IPR004160 -
Sebi20g00048 372 FunFam Putative translation elongation/initiation factor family protein 264 372 - -
Sebi20g00048 372 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 2 17 IPR031157 -
Sebi20g00048 372 Gene3D Translation factors 175 260 - -
Sebi20g00048 372 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 175 IPR000795 GO:0003924|GO:0005525
Sebi20g00048 372 SUPERFAMILY Translation proteins 169 262 IPR009000 -
Sebi20g00048 372 Pfam Elongation factor Tu GTP binding domain 1 148 IPR000795 GO:0003924|GO:0005525
Sebi20g00048 372 Pfam Elongation factor Tu domain 2 190 257 IPR004161 GO:0005525
Sebi20g00048 372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 181 IPR027417 -
Sebi20g00048 372 CDD eRF3_C_III 264 372 - -
Sebi20g00048 372 PANTHER TRANSLATION FACTOR 1 370 - -
Sebi20g00048 372 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 174 260 - -
Sebi20g00048 372 CDD eRF3_II 177 258 - -
Sebi20g00048 372 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 267 371 IPR009001 -
Sebi20g00048 372 PRINTS GTP-binding elongation factor signature 45 56 IPR000795 GO:0003924|GO:0005525
Sebi20g00048 372 PRINTS GTP-binding elongation factor signature 89 98 IPR000795 GO:0003924|GO:0005525
Sebi20g00048 372 PRINTS GTP-binding elongation factor signature 29 39 IPR000795 GO:0003924|GO:0005525
Sebi20g00048 372 Gene3D - 1 170 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00048 Sebi-Chr20 506614 510806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00048 1 367 Eukaryotic Initiation Factors Gene Family AT5G60390 36.757 5.42e-75 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00048 K03267 - gmx:100793653 699.123