Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00020 ATGTGGATGGTGGGTTGCAATGAAGTTGGTGGTGAGTTCAACTGTAACAACATGGCTGATTATCCATTCAATGGAAGGAAACTCAGGCCTCTGATGCCAAGGCCAGTGACTACTTCTCCTAACAACACTTCAGCTACAAACACTCCTTGCTTGAACCGCATTCATGGCCACGATTTCTTTTCACAATATCACAACCTGGCAGCATCAGTGGCAGAGCAGAACAAGAGAGAGTTCAACACTCCACCAGTTGTGGTGAGCTCAAGGTGGAATCCAACCCCAGAACAGCTAAGAGCACTGGAAGAATTGTATAGGAGAGGAACAAGAACACCATCTGCGGAACAAATCCAGCAAATCACTGCACAGCTTAGAAGATATGGAAAAATTGAAGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCCAGAGAAAGGCAGAAACGCCGCCGTCAAATGGAATCAGCTGCTGAGGGTCACACCCGTGACTTTGATAATACTACTCTTGAAATTGAAAAGAATAATAAGGACTTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACTCTTGCAGAGGAATCTGTTTCAATTCAAAGGGCAGCAAAAGCAGCAATTGCAGAGTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAATTACAGCAAAGAAGAAACTTTATGGAAAGGAATGCCACGTGGCATATGATGCAGATATCTTGTCCTCACCCTCCTACAGTTACCCCACACCACCACCTCATAAACACACCTCCTAATAACAGTAACACCTCTACAACTAGCATGGCCTCCACAACCACAGTAGCAGCTACAGTAATGGACCCAAAACTCATTAAGACCCATGATCTCAGCTTCTTCATTTCACCTCACACTCACAGAGAAAATGGTATTGTCCACTTAAGCAATATCACCACCGAGGGTGATAATAATTGTGTGGAATCTCAAACCCTTCAACTTTTCCCAATAAGGAATGGGGATGGTAGCAGTGATAACATTAACCAACAAAACGAGACAGAGATATCAGATTCAGCAATGAATGCACCGAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACTGA 1131 0.4385 MWMVGCNEVGGEFNCNNMADYPFNGRKLRPLMPRPVTTSPNNTSATNTPCLNRIHGHDFFSQYHNLAASVAEQNKREFNTPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAAEGHTRDFDNTTLEIEKNNKDLGASRTVFEVEQTKNWAPSTNCSTLAEESVSIQRAAKAAIAECRTDGWLQFDEGELQQRRNFMERNATWHMMQISCPHPPTVTPHHHLINTPPNNSNTSTTSMASTTTVAATVMDPKLIKTHDLSFFISPHTHRENGIVHLSNITTEGDNNCVESQTLQLFPIRNGDGSSDNINQQNETEISDSAMNAPSQFFEFLPLKN 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00020 376 Gene3D - 84 146 - -
Sebi20g00020 376 SMART HOX_1 84 151 IPR001356 GO:0003677
Sebi20g00020 376 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 73 370 IPR044555 GO:0003700|GO:0099402
Sebi20g00020 376 Pfam Homeodomain 87 146 IPR001356 GO:0003677
Sebi20g00020 376 ProSiteProfiles 'Homeobox' domain profile. 92 147 IPR001356 GO:0003677
Sebi20g00020 376 SUPERFAMILY Homeodomain-like 87 153 IPR009057 -
Sebi20g00020 376 CDD homeodomain 88 148 IPR001356 GO:0003677
Sebi20g00020 376 FunFam WUSCHEL-related homeobox 4 86 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00020 Sebi-Chr20 243644 245702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00020 1 376 Wox Gene Family AT3G18010 39.646 1.23e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Sebi20g00020 Homeodomain 8.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00020 - - gmx:100777274 569.311