Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00009 ATGGCGATAGTGCCTCACAAGCACAAACACAGACACTCTTTTCAGTTACTCCTCACGCTTCTCCTATTTCTTGGAATTCGTGAATCACAAGCAGATCTCACTTCCGAGCGAGCTGCATTGCTCTCTCTCCGTTCTGCCGTCGGCGGTCGAACTCTTCTCTGGAATCTCACCAACCAGAGCCCTTGCAACTGGGCCGGCGTCCAATGCGAACACGACCATATCGTCGAGCTTCACCTTCCCGGCGTTGCTCTTTCCGGCCAATTACCTACCGGAATATTCAGCAACCTCACACACCTCCGCACTCTCAGCCTCCGTTTCAACGCACTCACAGCCAATGGTGGTGGAGCGAAAAAGTTGGTGTTTTTTGGAAATTCGGCTAGGGGGTTTGATCTGGAGGATTTGCTGAGAGCTTCGGCGGAGGTGTTGGGGAAAGGGACTTTCGGAACGGCGTATAAGGCGGTGTTGGAGTCAGGGCCGGTGGTGGCTGTGAAAAGGTTGAAGGATGTTACCATTTCGGAGAAGGAGTTCAAGGACAAGATTGAATCTGTGGGAGCAATGGATCATCAAAATTTGGTTCCTCTGAGGGCATACTATTTCAGCAGAGATGAGAAGCTGCTTGTTTATGATTACATGCCAATGGGAAGCTTATCTGCGCTTTTGCATGGAAACAAAGGAGCAGGTAGGACACCACTGAATTGGGAAATCAGATCAGGCATTGCACTTGGAGCTGCTCGTGGCATCGAGTACCTACATTCACAAGGGCCTAATGTTTCCCATGGAAATATAAAGTCATCTAACATCCTCTTAACAAAATCCTATGATGCCAGAGTATCTGATTTTGGCCTTGCACACCTTGTTGGTCCTTCCTCCACCCCCAACCGTGTTGCTGGCTACCGTGCTCCTGAGGTAACTGATCCTCGCAAAGTATCTCAAAAGGCAGATGTCTACAGCTTTGGTGTGTTGTTGTTGGAACTTCTAACTGGGAAGGCACCTACTCACGCTCTCCTAAATGAGGAAGGAGTAGACCTACCCAGATGGGTTCAATCCGTGGTTAGAGAAGAGTGGACTTCTGAGGTATTTGATCTTGAGCTCCTTAGGTATCAGAATGTTGAAGAGGAGATGGTTCAGTTGTTGCAACTTGCAGTTGATTGTGCAGCACCATACCCTGATAAGCGCCCTTCAATGTCTGAAGTCACAAGGAGCATACAAGAGTTACGTCGGTCTAGCTTGAAAGAAGACCAAGACCAAATCCAACATGATCAGACCAATGATATAGAATTATAG 1284 0.4829 MAIVPHKHKHRHSFQLLLTLLLFLGIRESQADLTSERAALLSLRSAVGGRTLLWNLTNQSPCNWAGVQCEHDHIVELHLPGVALSGQLPTGIFSNLTHLRTLSLRFNALTANGGGAKKLVFFGNSARGFDLEDLLRASAEVLGKGTFGTAYKAVLESGPVVAVKRLKDVTISEKEFKDKIESVGAMDHQNLVPLRAYYFSRDEKLLVYDYMPMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAPYPDKRPSMSEVTRSIQELRRSSLKEDQDQIQHDQTNDIEL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00009 427 FunFam Probable inactive receptor kinase At1g48480 211 414 - -
Sebi20g00009 427 FunFam pollen receptor-like kinase 1 107 210 - -
Sebi20g00009 427 CDD STKc_IRAK 142 405 - -
Sebi20g00009 427 Pfam Leucine rich repeat N-terminal domain 35 69 IPR013210 -
Sebi20g00009 427 Gene3D Phosphorylase Kinase; domain 1 121 210 - -
Sebi20g00009 427 PANTHER OS05G0588300 PROTEIN 16 111 - -
Sebi20g00009 427 ProSiteProfiles Protein kinase domain profile. 136 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi20g00009 427 SUPERFAMILY L domain-like 50 111 - -
Sebi20g00009 427 SUPERFAMILY Protein kinase-like (PK-like) 140 404 IPR011009 -
Sebi20g00009 427 Pfam Protein kinase domain 139 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi20g00009 427 MobiDBLite consensus disorder prediction 405 427 - -
Sebi20g00009 427 Gene3D Ribonuclease Inhibitor 30 120 IPR032675 -
Sebi20g00009 427 Gene3D Transferase(Phosphotransferase) domain 1 211 426 - -
Sebi20g00009 427 ProSitePatterns Protein kinases ATP-binding region signature. 142 164 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00009 Sebi-Chr20 116912 119390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00009 108 408 Receptor kinase-like Gene Family AT3G17840 74.754 9.09e-163 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi20g00009 Pkinase 3.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00009 - - gmx:100818955 587.415