Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi209g00062 ATGGTTCTTTCTCTATTTACCAATGTTGAAGCCCAAGGTAGGCAAGAAGAACAGAACATGCCTGATTTACCCCAAAGTGTCCATCCAAGCAAAGGGATTGTAATAATAGCCCTTTCCATAATGTTTGCCATAACATTTCTCTTACTTGCCTATGTTAAATTCTGTCGTGTTAACCAAAACACCAATCTCCAAAACACTCATTTACTACCTAGATCAAGGTCTAGATTTTCTGGGATTGACAGAGAAGTAATTGAAACACTCCCTTTCTTCAAGTTTTCTTCCCTTAAGGGATTCAAACAAGGCCTAGAATGCACTGTTTGTCTATCCAAATTTGAGGACACAGAGATTCTCAGATTGTTACCAAAGTGCAAGCACGCTTTCCACATGAATTGCATTGACAAGTGGCTTGAAAACCACTCTACATGCCCTCTTTGCAGGTACAGGGTTGAAGCAGGGGACATCAAGAATCTCAACTATTCATTGAGCTCAAGGTTCATGAGAGTTCCTTCAAATCTAACTGAGGACTCAAATCTTGAAATCTTTGTCCAGAGGGAGCCATCTTATAGTAGAGGGTCATCAAAAAGAAGCAAGAACAAGAAAGAAGAACTAGTTCTTGATCTTGATCAAGAAGGTGATAATTATAATAGAAAGTGGAAACATGTGAACATGATCAATCATAGAATAGTTATCAGTGATGTTGTTACTAGGAGGAGGTGGAGTGATCTTAATTCTTCAGACTTGTTATCTTTGAACTGTGAGATGCTGAATGATATGTGTAGCACAAGATTCTCTTTCTCTCCTTTGGAATCCCCCAATGGTGGAAGGTTTCAACAAGGGACTTCAAATGTTCCTTCTACTTCTTATGAGGAAGAAAATTCATTTACGGCACTGAATCCAGCTGAGAAGAGGTCCATGTCAGAGATTGCGAATGTTCCAAGGTTTGTGGAAATTGGAAAAAGGAATAGGATCAGAGAATGTGTTGGAAGCGAAGAGAGGGTGTGGAGGATTTGGTTGCCAATTGCGCGAAGAACAGTACAATGGTTTGCAAGACAAGAAAGAAATCCAGTTGAATTACAACACAAACCTTTAGCTTCAAACGTTTGA 1104 0.394 MVLSLFTNVEAQGRQEEQNMPDLPQSVHPSKGIVIIALSIMFAITFLLLAYVKFCRVNQNTNLQNTHLLPRSRSRFSGIDREVIETLPFFKFSSLKGFKQGLECTVCLSKFEDTEILRLLPKCKHAFHMNCIDKWLENHSTCPLCRYRVEAGDIKNLNYSLSSRFMRVPSNLTEDSNLEIFVQREPSYSRGSSKRSKNKKEELVLDLDQEGDNYNRKWKHVNMINHRIVISDVVTRRRWSDLNSSDLLSLNCEMLNDMCSTRFSFSPLESPNGGRFQQGTSNVPSTSYEEENSFTALNPAEKRSMSEIANVPRFVEIGKRNRIRECVGSEERVWRIWLPIARRTVQWFARQERNPVELQHKPLASNV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi209g00062 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 14 353 - -
Sebi209g00062 367 FunFam RING-H2 finger protein ATL43 79 153 - -
Sebi209g00062 367 SUPERFAMILY RING/U-box 83 150 - -
Sebi209g00062 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 154 IPR013083 -
Sebi209g00062 367 SMART ring_2 104 145 IPR001841 -
Sebi209g00062 367 CDD RING-H2_EL5-like 103 146 - -
Sebi209g00062 367 Pfam Ring finger domain 103 146 IPR001841 -
Sebi209g00062 367 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi209g00062 Sebi-Chr209 1371032 1372135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi209g00062 29 354 C3H Transcription Factor Family AT2G20030 42.898 5.42e-79 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi209g00062 K10664 - gmx:100816668 452.981