Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi209g00041 ATGGAAGCACAAGAGTATAATTTCCAGAGCAGCAGCAACTTCTGTTCCCAATTCCCTTCGGACAACATGACAACCACCAACGTTAACGCCTCTTCCGACCACTTCATCGTGGAGGACCTCTTCGACTTCTCCAACGACGACGACGCTGCCATTACCGACGCCACCTTCGATTCTCTTCCCGCCAATTCCATCGACGATTCTCCACCTCTCGATCATTCCACCATCAATTCCAATTTCCTCCCCGACATTTCCTCCCGGAATTCCACCGACCCTCATTTCTCCAGTGACCTCTCCGTTCCGTATGATGAACTTGCGGAGCTGGAATGGCTTTCAAAATTTGCGGAGGAATCATTTTCTAGCGAGGACTTGCAGAAACTGCAACTGATATCCGGAATGAAAGCCCAAAACGACGCCGTATCAGAAACCCGTGAGCCCAACCCTGTTATATTTAACCCACAAGTGTCTGTTCCGGCAAAGGCCCGGAGCAAGCGGTCTCGTGGGCCCCCGTGTAATTGGACCTCTCGCCTTCTTGTTCTCTCCCCAACAACAACATCATCACCACCATCCTCTTCTCAGTCTGATACTGTTACGGCACCAAAGAAGTCTACACCGAGAAAGAGGGACACTGCAGATGGAGGGGAGGGCCGCAAGTGTCTGCATTGTGCCACGGATAAGACGCCGCAGTGGCGGACTGGGCCCATGGGCCCCAAAACGCTATGTAATGCGTGTGGTGTCAGGTATAAGTCGGGCCGGCTGGTTCCCGAGTATAGGCCCGCGGCGAGCCCAACGTTCATGCTGACGAAGCACTCCAACTCACACCGTAAGGTGATGGAGCTCCGGCGCCAAAAGGAGATGATGAAGGCCCAGCAACAGCAGTTACTTCAAATGCAACATCATCAGAACATGATGTTTGATGTATCATCCAACGGTGATGATTACTTGATTCATCAACACGTGGGCCCGGATTTCACACACATGATCTAG 984 0.5213 MEAQEYNFQSSSNFCSQFPSDNMTTTNVNASSDHFIVEDLFDFSNDDDAAITDATFDSLPANSIDDSPPLDHSTINSNFLPDISSRNSTDPHFSSDLSVPYDELAELEWLSKFAEESFSSEDLQKLQLISGMKAQNDAVSETREPNPVIFNPQVSVPAKARSKRSRGPPCNWTSRLLVLSPTTTSSPPSSSQSDTVTAPKKSTPRKRDTADGGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMLTKHSNSHRKVMELRRQKEMMKAQQQQLLQMQHHQNMMFDVSSNGDDYLIHQHVGPDFTHMI 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi209g00041 327 ProSitePatterns GATA-type zinc finger domain. 218 243 IPR000679 GO:0006355|GO:0043565
Sebi209g00041 327 MobiDBLite consensus disorder prediction 200 220 - -
Sebi209g00041 327 Pfam GATA zinc finger 218 251 IPR000679 GO:0006355|GO:0043565
Sebi209g00041 327 MobiDBLite consensus disorder prediction 175 199 - -
Sebi209g00041 327 SMART GATA_3 212 262 IPR000679 GO:0006355|GO:0043565
Sebi209g00041 327 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 213 276 - -
Sebi209g00041 327 PANTHER GATA TRANSCRIPTION FACTOR 27 292 - -
Sebi209g00041 327 MobiDBLite consensus disorder prediction 137 220 - -
Sebi209g00041 327 CDD ZnF_GATA 217 264 IPR000679 GO:0006355|GO:0043565
Sebi209g00041 327 Coils Coil 276 296 - -
Sebi209g00041 327 ProSiteProfiles GATA-type zinc finger domain profile. 212 248 IPR000679 GO:0006355|GO:0043565
Sebi209g00041 327 PIRSF Txn_fac_GATA_plant 6 308 IPR016679 GO:0003677|GO:0005634|GO:0045893
Sebi209g00041 327 FunFam GATA transcription factor 207 294 - -
Sebi209g00041 327 Gene3D - 208 293 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi209g00041 Sebi-Chr209 986934 988387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi209g00041 28 327 C2C2-Gata Transcription Factor Family AT4G32890 49.206 7.66e-95 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi209g00041 GATA 2.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi209g00041 - - gmx:100776588 426.402