Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi209g00038 ATGATGGCTGTGAGTTCGGCCTGCAAAGATGGGAGCAAGCTGGCAATGGACAACGGCAAGTATGTGAGGTACACACCAGAGCAGGTTGAAGCTCTGGAGAGGCTCTACCATGAATGCCCCAAACCCAGTTCCCTTCGCCGCCAGCAACTCATCAGAGAGTGCCCCATTCTCTCCAATATTGAACCAAAACAGATCAAGGTTTGGTTCCAAAACAGAAGGTGCAGAGAGAAGCAGCGGAAAGAATCGTCACGGCTGCAAGCAGTGAACAGGAAGCTAACAGCAATGAATAAATTACTGATGGAGGAAAACGACAGATTGCAGAAGCAGCAGGCGACCCTTGCCACCACAGACACGAGCTGTGAGTCGGTGGTAACGAGCGGTCAGCGCCACCTAACACCGCAGCATCCACCAAGGGATGCAAGCCCTGCAGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCATGGTTGCCCTGGAGTGGCTGCACGTGCCTGCGGCCTTGTGGGTCTTGAACCTGCCAGGGTTGCCGAAATCCTCAAAGATAGGCTATCATGGTTTCGTGATTGCCGAACTGTGGATGTTCTGAATGTGATGTCCACTGGAAATGGAGGAACCATTGAACTCCTTTACATGCAGTTGTATGCGCCAACAACTTTAGCACCAGGTCGTGACTTCTGGTTGCTGCGCTACACATCACTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCACTTAACAACACTCAGAATGGTCCTGCTATGCCCCCAGTGCAGCATTTTGTTAGAGCTGACATGCTGCCAAGTGGATACCTGATTAGACCTTGTGAAGGAGGGGGATCCATTATTCATATTGTTGATCATATGGTTTTAGAGCCCTGGAGTGTACCTGAAGTTTTGCGCCCACTTTATGAGTCATCAATGCTTCTTGCTCAGAGGACAACTATGGCGGCTTTGCGTCACTTGAGGCAGATTTCTCAAGAAATTTCTCAGCCAAGTGTTACAGGATGGGGAAGAAGGCCTGCAGCTCTACGAGCACTTAGTCAGAGATTGAGCAAGGGCTTTAATGAAGCTGTGAATGGGTTTGCAGATGATGGTTGGTCCATGTTAGAGAGTGATGGCATTGATGATGTCACCCTTCTTGTGAATTCATCACCTAGCAAATTGTTGGGAGTAAACCTTGGCTATAACAATGGATTTCCATCTATTAGCAGTTCTGTGCTATGTGCTAAAGCATCCATGTTGTTACAGAATGTCCCTCCAGTTATTCTTCTAAGATTCTTGAGGGAACACAGATCAGAATGGGCAGATAGCAGTATTGATGCTTACTCAGCTGCTACCATTAAAGCTGGTCCCTGTAGCTTGCCAGGGGCCCGAGCAGGAGGTTTTGGGGGTCAGGTTATTCTTCCACTAGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTGATTAAGCTTGAAAACATGGGCTACTATAGGGATGACATGACTATACCTGGTGACATTTTCCTCTTGCAACTTTGTAGTGGAGTGGATGAGCATGCAGTTGGCACCAGTGCAGAACTTGTTTTTGCTCCAATAGATGCATCTTTCTCTGATGATGCACCCATTCTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTAGCACGGATGGTGCTAGTCCAAACCGTACACTTGATCTTGCTTCTGCACTTGATGTTGGAACCACAGCAAACAAAGCATCTGGTGACAATTCAGGTCATTCTGGGAGCACAAAATCTGTAATGACAATAGCATTCCAGTTTGCATTTGAAGTCCATCTTCAAGATAATATAGCAACTATGGCACGACAATATGTCCGAAGCATTATTGCATCTGTTCAGAGGGTTTCATTAGCACTCTCTCCTTCGCGTTTTGGTTCTCACAATGCTTTTAACTTACCACCTGGCACTCCTGAGGCACAGACACTTGCTCGTTGGATCTGTAACAGCTATAGGTTCTATCTAGGAGTAGAATTACTAAAGTGTGAAGGCAGTGAGTCCATTCTCAAATCCCTTTGGCATCATTCAGATGCAGTTTTGTGCTGCTCTTTGAAGGCATTACCTGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTAGAGACAACCCTGGTTGCTCTTCAAGACATCACCCTGGAAAAAATCTTTGATGACAATGGAAAGAAAACTCTGTGCTCCGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGGATCTGTTTGTCAAGCATGGGGAGGCCAATATCCTATGAGAGAGCAGTAGCATGGAAAGTGCTAAACGAAGAAGAATCAGCTCATTGCATCTGTTTTATGTTCATCAATTGGTCTTTTGTCTGA 2472 0.4648 MMAVSSACKDGSKLAMDNGKYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQQATLATTDTSCESVVTSGQRHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWFRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEISQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSKLLGVNLGYNNGFPSISSSVLCAKASMLLQNVPPVILLRFLREHRSEWADSSIDAYSAATIKAGPCSLPGARAGGFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTIPGDIFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIIPLDSSTDGASPNRTLDLASALDVGTTANKASGDNSGHSGSTKSVMTIAFQFAFEVHLQDNIATMARQYVRSIIASVQRVSLALSPSRFGSHNAFNLPPGTPEAQTLARWICNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQIMQQGFMCIQGGICLSSMGRPISYERAVAWKVLNEEESAHCICFMFINWSFV 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi209g00038 823 ProSiteProfiles START domain profile. 138 340 IPR002913 GO:0008289
Sebi209g00038 823 SUPERFAMILY Bet v1-like 147 358 - -
Sebi209g00038 823 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Sebi209g00038 823 Pfam START domain 148 356 IPR002913 GO:0008289
Sebi209g00038 823 CDD bZIP 72 109 - -
Sebi209g00038 823 SMART HOX_1 17 83 IPR001356 GO:0003677
Sebi209g00038 823 Pfam MEKHLA domain 682 822 IPR013978 -
Sebi209g00038 823 Gene3D - 12 86 - -
Sebi209g00038 823 Gene3D - 182 363 IPR023393 -
Sebi209g00038 823 CDD START_ArGLABRA2_like 142 357 - -
Sebi209g00038 823 SUPERFAMILY Homeodomain-like 19 81 IPR009057 -
Sebi209g00038 823 Coils Coil 85 109 - -
Sebi209g00038 823 SMART START_1 147 357 IPR002913 GO:0008289
Sebi209g00038 823 CDD homeodomain 20 80 IPR001356 GO:0003677
Sebi209g00038 823 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 823 IPR044830 GO:0003700
Sebi209g00038 823 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Sebi209g00038 823 FunFam Homeobox-leucine zipper protein REVOLUTA 20 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi209g00038 Sebi-Chr209 851985 857843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi209g00038 16 823 Homeobox Transcription Factor Family AT4G32880 79.398 0.0 1367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi209g00038 START 4.2e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi209g00038 K09338 - gmx:100815727 1591.25