Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi208g00056 ATGGAGAATAACAAGATGGTAGACTATGAGGTGATAGAACAACTTGGAAGAGGAACATTGGGTGCAACTTTTCTTGTTCTCCACAAAACTGAGAGAAAGAGTTCTTATTCCTCTTCTCTTCATGATGATTTCATCCTTGGTAGGTATGTGCTGAAGAAGATTCGCTTGGCTAAGCAAACAGAGAAGTCTAAACTGACAGCGCACCAAGAGATGGACCTGATAGCAAAACTAAATTACTCTTATATTGTGGAGTTCAAAGATGCTTGGGTGGAGAAGGATGACTACATATGCATTATAACTGGCTATTGCGAAGGAGGTGACATGGAGGGGAATGGAAGGGAAGAGGGGAGAGTTAAAGATTTGAAGTTAACCTCTCCCATGTTTGGAACTCTGAAGTGGAGGAAAATTAGGAATTACCATAAAGTCTGCAGATGGATGACTCAATTGTTGCTAGCTGTGGACTACCTGCACTCCAATCGTGTGCTCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGAAAATAACATTCGGCTAGGTGACTTTGGTCTTGCAAAGCTACTTGACACAGATGACCTTTCTTCCTCGGTTGTCAGAACTCCAAACTACATGTGTCCTGAGATCCTTGCTGATATGCCTTATGGTTATAAATCTGATATATGGTCGCTTGGTTGCTGCATGTTTGAAATTGTTGCACATCAACCGGCTTTTCGTGCTCCGGACAGGGCTGGACTTATCAATAAAATAAATAGATCCACCATTTCTCCACTGCCAATTGTTTACTCTTCAACACTTACTGGCAAAGCATTGATGGGGAGAGTGAGAATGATAGACTACATCTCTCCACCAAGGTGGCAACATCCCTTCTTGTCAACGATGATTTTGATGGTGACATCTCTTCCTGTTGACAATCACTCCAACTACATCTCTCCACCAAGGTGGCAACATCCCTTCTTGTCGACGATGATTTTGATGGTGACATCTCTTTCTGTTGACAATCACTCCAGTAATGACATTTCTTGTTGGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACATAGACCAACTGCAGCTGAATTGTTAAGGCATTCTCATTTACAACCTTTTGTTCTCCGCTGTCGTAATGCATCATCTGTTTTTCTACCAGTGCATCTGATTAGTAGCCCAAAGGATAAAATTAAAAAATCTTACAATTCTAATGGTGACAAAGACCATAGGGACAAAGAAGCAGGATTAATGAATCATTTGGAGCGTGTTTATCCAATTCAGGGAAATGGAGATGTACAAACAAGCAACCGGCATAGTGATGGCAAGCTCGCTGTGTCAACCAGCACAGAAGAGTGCCTTGAGACTAAAATGGTTGATCCTACCAGCTACACTATGGAATTCTCTACTAGTATTAGTGGGTCAACAACATCTGAATCAACCATTTGCAGTGTGTGCAAGGAAGCAGACTTTAAAAGTAGAGCTGCAAGGGACACAGCTGACAGTGAGATCACTTCAAAGAGCACACTAGATTCTGTACATGAAAAACAAGTATTTGCTGCTGAACATTTTCAGAAGTCATATGCGATTGACATAAATGCAGTGACTAAAAAAGTTGAAGATACTTCTTCCAATGAAGGTTTTGATAAAGCTAAAGCAGGGAAGGAAGATGCCAAACTTGAAGACCCCAGTAAATCAATAGTGTCCAGTGAAGACAGTAATGGTAATGATAAAGATGGGTCCACTGATGAGGTCACATCAAAAAGTACACCAGATTCTGTGCATGTTGAGCAAGGATTTACTGCTGAACATTTTCAGAAGGCTGATGCAATTGACATAAATGCAGTAACTACAGAAGTTGAATATAAATTTTCCAATGTGGCTTTTGATAAAGCTGAAGCACAGAGGGAAGATGCCAAACCTGAAGACTCCAGTACATCAATTATTTCCAGTGAAGACAGCAATGGAAATGATAAAGATGAGTCCATTGATGAGTTCATGTCAAAGAGGACACTGGATTCTGTGCATGAAGAACAAGGATTTTCTGCTGAAGATTTTCATAAGTCAGATGCAATTGACATAAATTCTGTGAATACAAAAGTTGAAGGTACTTTTTCCAATGAAGGTTTTGATAAAGCTGAAGCACAAAGAGAAGATGCCAAACCTGAGGACTCCAGTAAATCAATTATTTCCAGTGAAGACAGCAATGGCAATGATAAAGATGGGTCCGTTGATGAGATCATATCAAAGAGCACACTAGATTCTGTGCATGAAGAAGTAGAACAAGGATTTGCTGCTGAACATTTTCAGAAGCCGGATGTATTGGACATAAATGCAGTGACTACAGAAGTTGAAGGTACTTTTTCCAATGAAGTTTTTGAAAAAGATGAAGAAGATGGAGAAGATGCCGAACCTGAGGAGTCCAGTAAATCAATAATGTCCACTGAAGACAGCACTGGCAATGATAAAGATGGGTCCATTGCTGAGACAACATCAAAGAGCACACTAGATTCTGTTCATGAAAAACAAGGATTTGCTGCTGAACATTTTCAGAAGCCAGATGTGTTTGACATAAATGCAGTGAGTACAAAAGTTGAAGGTACTTTTTCCAATGAAGGTTTTGATAAAGTTGAAGTACAGGAAGAAGATGCCGAACCTGAGGATTCCAGTAAACCAATAATGTCCAGTGAAGACAGCAGAAGCAATGATAAAGATGGGTCCATTGATGCAGAAAAGTCATCACCAATTGTACATCCTGTTAGGGTTGAGCATGACACTGAAGCTGAAAGCTGCTTAAAGGAAAGTGAAAACCCTGAAGCATTCACAGAAGGCTTATTACAGTCACACAAGGACAACTTGATTTCTGAGAGTAATGATACACTTCCAGGTAAGGATGAAGGCACAGCAAACACACACATAATCAGTTGTTCCACACATAAAGATGGTAATGCCATTGTGGTTGATAAGACACCAAATGGCATGTCATCAAGTACACATATTTCAGTAGGTGGTGATAAAACAAAGAGGGTGTTGGGTGATTCCTGCCAACAAAGAGCTGATGCTCTGGAATCCTTGCTTGAATTATGTGCTCATCTACTTAAACAAGGAAAGCTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGATGCTGTCTCATCCAGAGAAACAGCAATATGGCTGACAAAAAGCCTCATCTCCTCACAAAAATTTAATCAGGAAACCTAG 3231 0.4033 MENNKMVDYEVIEQLGRGTLGATFLVLHKTERKSSYSSSLHDDFILGRYVLKKIRLAKQTEKSKLTAHQEMDLIAKLNYSYIVEFKDAWVEKDDYICIITGYCEGGDMEGNGREEGRVKDLKLTSPMFGTLKWRKIRNYHKVCRWMTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGDFGLAKLLDTDDLSSSVVRTPNYMCPEILADMPYGYKSDIWSLGCCMFEIVAHQPAFRAPDRAGLINKINRSTISPLPIVYSSTLTGKALMGRVRMIDYISPPRWQHPFLSTMILMVTSLPVDNHSNYISPPRWQHPFLSTMILMVTSLSVDNHSSNDISCWKQLIKSMLRKNPEHRPTAAELLRHSHLQPFVLRCRNASSVFLPVHLISSPKDKIKKSYNSNGDKDHRDKEAGLMNHLERVYPIQGNGDVQTSNRHSDGKLAVSTSTEECLETKMVDPTSYTMEFSTSISGSTTSESTICSVCKEADFKSRAARDTADSEITSKSTLDSVHEKQVFAAEHFQKSYAIDINAVTKKVEDTSSNEGFDKAKAGKEDAKLEDPSKSIVSSEDSNGNDKDGSTDEVTSKSTPDSVHVEQGFTAEHFQKADAIDINAVTTEVEYKFSNVAFDKAEAQREDAKPEDSSTSIISSEDSNGNDKDESIDEFMSKRTLDSVHEEQGFSAEDFHKSDAIDINSVNTKVEGTFSNEGFDKAEAQREDAKPEDSSKSIISSEDSNGNDKDGSVDEIISKSTLDSVHEEVEQGFAAEHFQKPDVLDINAVTTEVEGTFSNEVFEKDEEDGEDAEPEESSKSIMSTEDSTGNDKDGSIAETTSKSTLDSVHEKQGFAAEHFQKPDVFDINAVSTKVEGTFSNEGFDKVEVQEEDAEPEDSSKPIMSSEDSRSNDKDGSIDAEKSSPIVHPVRVEHDTEAESCLKESENPEAFTEGLLQSHKDNLISESNDTLPGKDEGTANTHIISCSTHKDGNAIVVDKTPNGMSSSTHISVGGDKTKRVLGDSCQQRADALESLLELCAHLLKQGKLEELAAVLRPFGEDAVSSRETAIWLTKSLISSQKFNQET 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi208g00056 1076 MobiDBLite consensus disorder prediction 654 691 - -
Sebi208g00056 1076 MobiDBLite consensus disorder prediction 632 759 - -
Sebi208g00056 1076 SUPERFAMILY Protein kinase-like (PK-like) 8 389 IPR011009 -
Sebi208g00056 1076 Gene3D Transferase(Phosphotransferase) domain 1 131 438 - -
Sebi208g00056 1076 MobiDBLite consensus disorder prediction 786 853 - -
Sebi208g00056 1076 MobiDBLite consensus disorder prediction 542 566 - -
Sebi208g00056 1076 MobiDBLite consensus disorder prediction 539 603 - -
Sebi208g00056 1076 MobiDBLite consensus disorder prediction 711 728 - -
Sebi208g00056 1076 Pfam Protein kinase domain 9 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi208g00056 1076 MobiDBLite consensus disorder prediction 738 759 - -
Sebi208g00056 1076 SMART serkin_6 9 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi208g00056 1076 MobiDBLite consensus disorder prediction 886 929 - -
Sebi208g00056 1076 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Sebi208g00056 1076 ProSiteProfiles Protein kinase domain profile. 9 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi208g00056 1076 Gene3D Phosphorylase Kinase; domain 1 1 102 - -
Sebi208g00056 1076 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 8 1027 - -
Sebi208g00056 1076 MobiDBLite consensus disorder prediction 812 839 - -
Sebi208g00056 1076 MobiDBLite consensus disorder prediction 868 929 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi208g00056 Sebi-Chr208 1351439 1359226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi208g00056 8 241 AGC Kinase Gene Family AT1G45160 26.996 3.47e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Sebi208g00056 Pkinase 2.1e-49 CL0016