Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi208g00053 ATGGAGTCTCATGACGAAACAGGATGCCAGGCTCCAGAACGTCCCATACTTTGCATTAATAATTGTGGCTTCTTTGGTAGGGCTGCTACCATGAATTTGTGTTCCAAATGTTACAAAGACATGCTGTTGAAGCAGGAACAGGACAAACTTGCAGCAGCATCGGTTGAAAACATTGTGAATGCCGGTTCTAGCTGCAATGGGAAGCAGGCTGTGACTGCAGGTGCTGTGAATGTACAAGTTGGAGATGTGGAGGTCAAGACAGTATGTGCTGAGATTTCTGGGGATTCATCCTCTGGTGAGAATTTGGAGATGAAAGCCAAGACAGGTCCCAGCAGATGTGCTACTTGCCGGAAGCGTGTTGGATTAACTGGTTTCAGCTGCAAATGTGGAAACCTCTTTTGTGCAATGCATCGCTATTCTGACAAACATGATTGCCCTTTTGATTATCAGACTCTTGGTCGGGATGCCATAGCTAAAGCCAACCCCATAATTAAGGCTGATAAGCTTGACAAAATCTAG 519 0.4547 MESHDETGCQAPERPILCINNCGFFGRAATMNLCSKCYKDMLLKQEQDKLAAASVENIVNAGSSCNGKQAVTAGAVNVQVGDVEVKTVCAEISGDSSSGENLEMKAKTGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHDCPFDYQTLGRDAIAKANPIIKADKLDKI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi208g00053 172 Gene3D - 1 62 - -
Sebi208g00053 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Sebi208g00053 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 172 - -
Sebi208g00053 172 FunFam Zinc finger AN1-type containing 6 88 168 - -
Sebi208g00053 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Sebi208g00053 172 Gene3D - 89 168 IPR035896 -
Sebi208g00053 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Sebi208g00053 172 Pfam AN1-like Zinc finger 113 150 IPR000058 GO:0008270
Sebi208g00053 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Sebi208g00053 172 SUPERFAMILY AN1-like Zinc finger 104 167 IPR035896 -
Sebi208g00053 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Sebi208g00053 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi208g00053 Sebi-Chr208 1248877 1249395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi208g00053 5 172 C2H2 Transcription Factor Family AT3G52800 42.604 1.15e-40 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi208g00053 - - gmx:100499995 314.309