Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi208g00048 ATGGAGCAAACCACACTCGACTCCATTCAGTTCAACGAAGAAATCCAGGGAATCATGGCTCCGGCGCCGGAATCCGCCAGCTCCTTCACCGCGCTGCTCGAGTTGCCTCCCACGCAGGCCGTCGAGCTTCTCCACTCGCCGGAGCGCGCCGGAAAACCGCCTCACCACGTCAGCAATCCGAAACCCTATCCGTTGAGCTCTTTCGGTGGCACTGATACCAGGAATTTGACCTTCCCCTCCAACGCCGCGTTGATTGAACGCGCCGCCAGGTTCTCCGTATTCGCCGGAGAGAATTCGCCGCCGCCGGAGGTGAAGAGCGAGCTTCCGGAGACGGATTCGAACCCTAGTTCGACTCAGGGCGGTGGATGTGTCTCTGATCCCGTAGTCGAGAACAAGAACCCGAAGGGCGCGAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGTGTCGTCAAAGAAGAGCAAGGGCGTTGCCGACGAGAGCGACGGCGACGGCGAGAAGCTTCCGTACGTTCACGTTCGCGTTCGTCGAGGTCAAGCCACGGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAACTTTTACAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACGGCATTGGTTCTGGATAAAATCATCAACCATGTGCAATCTCTACAGCATGAAGTAGAGATTTTATCAATGAAACTGGCTGCAGTTAACCCAGTAATTGATTTCAACCTCGACAGCATATTGGCTACTGAAGGAGCTTCTCTAATGGACAGTAACTTCCCTACCACAGTTGCACCCGTTGCGTGGCCAGAAATCCCACACAATGGAAACAAACAGCAATATCAGCAACCATGGCAATTTGATGCATTCCACCAACCACATTGGGGGAGGGAAGAAGACAACCCTAATTTCATGACTCCAGAAAACTCACTTTTGAGTTATGACTCATCGGCAAATTCAGGTACCGGAACCAAATTGGGTTTTCTTTTTACCTGGAGTCTTTTCTTTGGGGTCAACTTCTTACCTTGGGTCAATTCATGCCATGATCTTCCGACTGTGAAGAAAGTCCATGCCTTTCTCATTGTCTCCAATGCATTGGCGTCCAATGCCAATTCCACTGCTTCCAAGATCCTCACCTTGTATGCACAGTTTCATGACCTTGCCAGTGCCATTGGGGTGTTCAAAACGACATTAGAGAATGCACCCGACATAATGATGTGGAATTTAATCATCAGGTCCCATGTTGACTTGGGACTATTCCATTCAGCTTTGTCAAAGTACAAAAAGATGAGGCAAATGGGTGTTCCCCATGATACTTTTACTTTTCCAATAGTAAACCGAGCCTTATCATCCATAAGGACTGATGCTGTGTATGGAAAGATGGTCCATTGTGTAGCAATTCAAATGGGTTTGGATATGGATTTATATTTTTGTAATACCATGATTGATGTTTATGTGAAATGTGGGTGCATTGGTCATGCTCGCCACTTGTTTGATTTAATGTTGCAGAGAGATGTGGTTTCGTGGACTTTGATGATTGCTGGATATATTTCTGAGAGACATGTTAGTGTGGCATGTGATTTGTTCAACAAGATGAGGATGGAATTGGAACCAAATTCAGTTACTCTTATTGTAATGCTGCAGGCATGTTGTGTTTCCACAACATTAAATGTGGGAGCTCAAATTCATGGGTATGCAGTAAAGAGTGGATTGCTAATGGATTGGTCAGTGAATAATTCAGTTTTGAGAATGTATGCTAATAAAGGGAGTACTGAAGAAGTGGAACTTTTATTTAGTGAAATAAACAGAAAGGATGTGGCTTCCTGGAATATTTTGATTTCCTTTTATTCCTCGGAGGGAGACATCAAGAGAGTGGCTGGTTTGTTCAATGAAATGCACACCCTAGAAGTGCATTCATGGAACATTGAGACTTTAACTCTAGTGATATCAGCTTTTGCAAAGTCTGCTGGCCAGCTGAATGGAAGGCCAACTGGCCAGACGGATGGAAGGCCAACTGGTCAGACTAATGGAAGGCCAGCTGACCAGACAGATGAAAGGCCAGCCGGCTAA 2088 0.4665 MEQTTLDSIQFNEEIQGIMAPAPESASSFTALLELPPTQAVELLHSPERAGKPPHHVSNPKPYPLSSFGGTDTRNLTFPSNAALIERAARFSVFAGENSPPPEVKSELPETDSNPSSTQGGGCVSDPVVENKNPKGAKRKEREKKVKVSSKKSKGVADESDGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPVIDFNLDSILATEGASLMDSNFPTTVAPVAWPEIPHNGNKQQYQQPWQFDAFHQPHWGREEDNPNFMTPENSLLSYDSSANSGTGTKLGFLFTWSLFFGVNFLPWVNSCHDLPTVKKVHAFLIVSNALASNANSTASKILTLYAQFHDLASAIGVFKTTLENAPDIMMWNLIIRSHVDLGLFHSALSKYKKMRQMGVPHDTFTFPIVNRALSSIRTDAVYGKMVHCVAIQMGLDMDLYFCNTMIDVYVKCGCIGHARHLFDLMLQRDVVSWTLMIAGYISERHVSVACDLFNKMRMELEPNSVTLIVMLQACCVSTTLNVGAQIHGYAVKSGLLMDWSVNNSVLRMYANKGSTEEVELLFSEINRKDVASWNILISFYSSEGDIKRVAGLFNEMHTLEVHSWNIETLTLVISAFAKSAGQLNGRPTGQTDGRPTGQTNGRPADQTDERPAG 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi208g00048 695 FunFam transcription factor bHLH48-like isoform X1 175 247 - -
Sebi208g00048 695 FunFam Pentatricopeptide repeat-containing protein 411 565 - -
Sebi208g00048 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Sebi208g00048 695 PANTHER OS07G0578800 PROTEIN-RELATED 350 557 IPR045215 GO:0003723|GO:0009451
Sebi208g00048 695 Pfam PPR repeat family 510 557 IPR002885 -
Sebi208g00048 695 Gene3D Tetratricopeptide repeat domain 353 464 IPR011990 GO:0005515
Sebi208g00048 695 Gene3D Tetratricopeptide repeat domain 465 569 IPR011990 GO:0005515
Sebi208g00048 695 Gene3D Tetratricopeptide repeat domain 570 666 IPR011990 GO:0005515
Sebi208g00048 695 NCBIfam pentatricopeptide repeat 513 539 IPR002885 -
Sebi208g00048 695 NCBIfam pentatricopeptide repeat 484 513 IPR002885 -
Sebi208g00048 695 NCBIfam pentatricopeptide repeat 614 640 IPR002885 -
Sebi208g00048 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Sebi208g00048 695 MobiDBLite consensus disorder prediction 665 695 - -
Sebi208g00048 695 Pfam PPR repeat 614 640 IPR002885 -
Sebi208g00048 695 Pfam PPR repeat 412 441 IPR002885 -
Sebi208g00048 695 Pfam PPR repeat 585 611 IPR002885 -
Sebi208g00048 695 MobiDBLite consensus disorder prediction 109 124 - -
Sebi208g00048 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Sebi208g00048 695 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 228 IPR011598 GO:0046983
Sebi208g00048 695 CDD bHLH_AtBPE_like 168 253 - -
Sebi208g00048 695 MobiDBLite consensus disorder prediction 45 70 - -
Sebi208g00048 695 Pfam Helix-loop-helix DNA-binding domain 182 229 IPR011598 GO:0046983
Sebi208g00048 695 MobiDBLite consensus disorder prediction 665 687 - -
Sebi208g00048 695 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 247 IPR036638 GO:0046983
Sebi208g00048 695 Gene3D - 175 246 IPR036638 GO:0046983
Sebi208g00048 695 SMART finulus 184 234 IPR011598 GO:0046983
Sebi208g00048 695 MobiDBLite consensus disorder prediction 148 165 - -
Sebi208g00048 695 MobiDBLite consensus disorder prediction 95 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi208g00048 Sebi-Chr208 1145174 1157239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi208g00048 2 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.929 2.12e-87 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi208g00048 PPR_2 3.9e-11 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi208g00048 - - gmx:100799133 501.516