Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi208g00041 ATGGATTCCAATACCCGTCAGGGTTATCAATTCCAACAACAGAACCAACCCAATTCTGGGTTGCTTCGTTTTCGCTCTGCACCAAGTTCACTTCTTGCAAATCTCACACCTTGTTCTGCTCTCAACAAGAGCAGCCACCTCTGGGAGGGTTCTGAATCTGAGAGATTTGTTTCGAGATTTGTGGGTTACGGTGCTGATAGCAGGAACGACACTACTGCTGCTGCTTCTTCTTCTAGCTTCCAAGAGTTGGAAGAGAATAAGCCTTCTTCTAAGTCTCTGAGTGGCATGAATTCCCAGCAGCAAGGCTATGGTGGTGGGTTGCCACCTCACTATCCTCTGAGACATGGTTCTGCTGCTACTTCCAGTTCTGCTATGGATGGTTCATTTGGGTTGGTGGGTTCAATGGGAATGGATCATGAAGCACCCCACAAGAGCTTTGGTTCCCATCTTCTCAGGCAGGGTAGTTCCCCTGCTAGCCTTTTCTCCAACAACATTTCCTTTCAAAATGGGTTTGCCACCATGAAAGGTGTTGGAAACTATGGTGCTGTGAATGGCAGTAATGATGAAATTAGTCCATCTATTAATAGGTTGAAGAGTCAGATTAGCTTCTCATCAAGAACTGCTTCTTCTTTGGGGATGTTGTCACAGATCTCTGAACTAGGGAGTGAGGATATTGAGACTACTAGCCCTGACGATGTGGGGCAGGGAAGTAGCAATGGTGATGCTCAACAATTTGGCCATGGATTCCCCTATGCTTCTTGGAATGATACAACACAACTCTCAGAGAATCTCAGTGTCTTGAAAAGAGGAAGAGGTGGTAATGAAAAGATGTTTTCTGATGTTCAGAATGGAGATCTAGGAAATCAAGTTCACACATTATCTCATCACTTGAGTTTACCAAAATCTTCAGCAGAGATGGTTGCTATGGAGAAGTTGCTTCAGTTCCCTGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGCTGTGCTACTCATCCTCGAAGCATTGCTGAAAGGGTGAGAAGAACACGGATCAGTGAACGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAGCAAACTAATACAGCAGACATGTTGGACTTGGCGGTTGAATACATCAAAGATCTTCAGAAACAATTCAAGAGTCTAAGTGAAAAACGAGCAAACTGCAAATGTATAAGCATGCAGAAGGCAGATACAAATCAAATTGCTTGA 1224 0.4395 MDSNTRQGYQFQQQNQPNSGLLRFRSAPSSLLANLTPCSALNKSSHLWEGSESERFVSRFVGYGADSRNDTTAAASSSSFQELEENKPSSKSLSGMNSQQQGYGGGLPPHYPLRHGSAATSSSAMDGSFGLVGSMGMDHEAPHKSFGSHLLRQGSSPASLFSNNISFQNGFATMKGVGNYGAVNGSNDEISPSINRLKSQISFSSRTASSLGMLSQISELGSEDIETTSPDDVGQGSSNGDAQQFGHGFPYASWNDTTQLSENLSVLKRGRGGNEKMFSDVQNGDLGNQVHTLSHHLSLPKSSAEMVAMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKSLSEKRANCKCISMQKADTNQIA 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi208g00041 407 SMART finulus 335 385 IPR011598 GO:0046983
Sebi208g00041 407 MobiDBLite consensus disorder prediction 1 21 - -
Sebi208g00041 407 Gene3D - 330 402 IPR036638 GO:0046983
Sebi208g00041 407 MobiDBLite consensus disorder prediction 71 119 - -
Sebi208g00041 407 MobiDBLite consensus disorder prediction 223 247 - -
Sebi208g00041 407 Pfam Helix-loop-helix DNA-binding domain 334 380 IPR011598 GO:0046983
Sebi208g00041 407 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 394 IPR036638 GO:0046983
Sebi208g00041 407 FunFam Transcription factor bHLH130 family 330 399 - -
Sebi208g00041 407 CDD bHLH_AtbHLH_like 334 387 IPR045239 -
Sebi208g00041 407 MobiDBLite consensus disorder prediction 71 104 - -
Sebi208g00041 407 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 329 379 IPR011598 GO:0046983
Sebi208g00041 407 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi208g00041 Sebi-Chr208 1006692 1009041 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi208g00041 1 384 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 45.771 9.37e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi208g00041 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi208g00041 - - gmx:100819605 558.91