Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi208g00022 ATGGTTTGCGACTACGTTTACAAGCATTTCGTCGTCGCTGTCTTCTCGGCAACTTTGATTTCTCAGGGTTTAGCATTTACTGATCCCTCCGATGTCATAGCTCTCCAGGATCTATACAAGACCTTAAACTCTCCACCAGTGCTCCAAGGCTGGAACGGTGGCGATCCTTGTGAGGAGTCTTGGACAGGAGTAGCATGTTCTGGGTCATCAGTTATACACCTCAAAATTCAAGGATTGAACCTCACAGGAGATCTTGGAGGCTTGCTCTATAATCTACAGAATTTGAAGCAACTTGATGTCAGTTCGAACAACATAGTGGGTGAAATACCATACGGTTTACCTCCCAATGCCACACATATAAATTTGGCTTGCAACTACTTGAGCCAAAATATCCCCTATTCATTATCAACCATGAAAAAACTAAGACAACTGAATTTAAGCCACAATCTTCTTTATGGACCCATTGGCAATGTGTTTACTGGCTTAGATAATCTCAAAGAAATGGACCTTTCATACAATAATTTCACCGGAGACCTGCCAAGTTCATTTGGTTCCTTGACAAACCTTGATAGATTGTTCCTGCAGAATAACAGATTCACAGGATCAGTCACCTACCTGGCTGAGCTTCCACTTATTGATCTGAATATTCAAGAAAATCTGTTTAGTGGCATTCTTCCACAACATTTTCAGTCCATACCAAACTTATGGATTGGAGGGAATAAGTTTCATGCAGCGGAGGACTCCCCTCCCTGGGCATTTCCTTTGGACAGTGTACCCGTTGAGCACAATACTAGTCGCCCACCCACAACTCAGGCAAATGCCATCGAGAACTATGTTCCTCCCAAGGTAAGAAAACACAAGAAACGTATGGGTCCTGGAGGAATAGCTTTTATGGTTGGTGGAGGAACATTATTGGTGACAGGATTGGCCCTCTTCATCGCGATCCGTTTGAATAAATTTCATATACTGAGACTGAAGAGCTTCAGAAGCAACCATAGTTCATTGCCTTCTTTTCCAATCAGTGCAGTCAAAGAGGTCACTTCAACGGCACTTGATGAAAGTCTGAAAATCCCATCTTTTAACGCTGCATCTCTTTTGGATCCAAGGCGATTACCTTCACAGAACCATAAAAGAATTGGGGGAACGTCAAGAAGAAGTTTTTCCGAAAGAGACAGATTCACTGAAAGGACGAAGGTTTATACAGTAGCGGAGGTTCAGTTGGCTACAAACAGCTTCAGTGAAGACAACCTTCTGGGAGAGGGAGCTCTTGGCCCTGTTTACAGAGCTCAATTTCCAGATAACAAGATTCTGGTCGTGAAGAATATCCACATGGCGGGCTTATCTTTCAGTGAAGAGGAAAAGTTCTTAGATGTCGTTTCTACCGCTTCTCGTCTGAAGCACCCCAACATCATTGCACTTAAAGGTTACTGTTTGGAGCATGGACAGCATCATCTTGTCTACGATTATGTCAGAAATTTAACTCTAGACAGTGCTCTACACAGTGCAGCATACAAACCTTTATCGTGGGGCCTCCGTGTCCGAATTGCTCTATGCATTGCTCAAGCTCTGGACTATTTGCACACCACGTTCTCCCCTCCTGTCGCCCATGGCAACGTGAAGGCTGCCAATATTCTACTGGACGAAAATCTGGTGGCTCGTGTTTGTGACTGTGGTTTGGCTATTTTGAAACCACTGATGAGCAATGAAGTCAAAACTCGGGCTTCTGAGATTGCTATTCGAGATACAGGCTACAGTTCACCTGACCATGGCGAACCGGGAATTGGCAGCACAAAGAGTGACGTCTTTGCCTTTGGAGTGTTACTGCTGGAACTGTTATCAGGAAGAAAACCTTTCGATGATGTTAAGCCAAAGGAAGAGCAATATCTAGCAAAATGGGCTTCATCAAGGCTTCATGATAGCGAGAGTTTGGAACAGATGGTGGATCCGGCAATTAAAAGGACACTCTCATCCAAGGCCCTTTCTGGTTATGCTGATATCATCTCCCTCTGTATTCAGCCTGTGAAGGAATTCCGACCTCCAATGTCTGAAATCGTAGATTCTCTTGTATCTTTTTCACAAAAGTTCGACATGTCAAAGAGCGGTGTAGAAGATGGTACTGAATTTGATCCACTTGAGAGGTCTTTCCGTACAACCACCTCCCGCTTTTTGCCTTCACCTACAATGAGCTACGTATCTGCCTAA 2202 0.4405 MVCDYVYKHFVVAVFSATLISQGLAFTDPSDVIALQDLYKTLNSPPVLQGWNGGDPCEESWTGVACSGSSVIHLKIQGLNLTGDLGGLLYNLQNLKQLDVSSNNIVGEIPYGLPPNATHINLACNYLSQNIPYSLSTMKKLRQLNLSHNLLYGPIGNVFTGLDNLKEMDLSYNNFTGDLPSSFGSLTNLDRLFLQNNRFTGSVTYLAELPLIDLNIQENLFSGILPQHFQSIPNLWIGGNKFHAAEDSPPWAFPLDSVPVEHNTSRPPTTQANAIENYVPPKVRKHKKRMGPGGIAFMVGGGTLLVTGLALFIAIRLNKFHILRLKSFRSNHSSLPSFPISAVKEVTSTALDESLKIPSFNAASLLDPRRLPSQNHKRIGGTSRRSFSERDRFTERTKVYTVAEVQLATNSFSEDNLLGEGALGPVYRAQFPDNKILVVKNIHMAGLSFSEEEKFLDVVSTASRLKHPNIIALKGYCLEHGQHHLVYDYVRNLTLDSALHSAAYKPLSWGLRVRIALCIAQALDYLHTTFSPPVAHGNVKAANILLDENLVARVCDCGLAILKPLMSNEVKTRASEIAIRDTGYSSPDHGEPGIGSTKSDVFAFGVLLLELLSGRKPFDDVKPKEEQYLAKWASSRLHDSESLEQMVDPAIKRTLSSKALSGYADIISLCIQPVKEFRPPMSEIVDSLVSFSQKFDMSKSGVEDGTEFDPLERSFRTTTSRFLPSPTMSYVSA 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi208g00022 733 SUPERFAMILY Protein kinase-like (PK-like) 387 688 IPR011009 -
Sebi208g00022 733 Gene3D Ribonuclease Inhibitor 28 257 IPR032675 -
Sebi208g00022 733 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Sebi208g00022 733 Pfam Leucine rich repeat 158 199 IPR001611 GO:0005515
Sebi208g00022 733 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 253 - -
Sebi208g00022 733 Gene3D Phosphorylase Kinase; domain 1 375 489 - -
Sebi208g00022 733 Pfam Protein tyrosine and serine/threonine kinase 416 688 IPR001245 GO:0004672|GO:0006468
Sebi208g00022 733 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 392 699 - -
Sebi208g00022 733 ProSiteProfiles Protein kinase domain profile. 412 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi208g00022 733 SUPERFAMILY L domain-like 27 236 - -
Sebi208g00022 733 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 378 489 - -
Sebi208g00022 733 FunFam Leucine-rich repeat receptor-like protein kinase 490 699 - -
Sebi208g00022 733 Gene3D Transferase(Phosphotransferase) domain 1 491 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi208g00022 Sebi-Chr208 530655 535110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi208g00022 15 733 Strubbelig Receptor Gene Family AT5G06820 54.918 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Sebi208g00022 PK_Tyr_Ser-Thr 2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi208g00022 - - tpra:123896060 1157.9