Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi208g00020 ATGGCTCTCGGATCGTCTTCAAGAAAGGAGTTCAAGCCGACAGATGATCAACTGCTGCGATTGTTCCTCTACAATAAGGTCCATGGTAAACCTGTGCCTAACGATGCAACCATTCTTGAATATGACTTGTTTGGTGAAAGAAACCCTTGGGAGATTTGGCAAGAGTTTGAAGGTCCCTACTCTTACGATGAAAAGGACCTCTACTTCTTCACCATCTTAAAGAGGAAGTTTGAAGGAGGCACTAGCGGACGCGTGGTTCGCACGATTGGGTGTGGCGCATGGGAAGGTGAAGATGTTGGAAAAGCTATAGTGGCTACTGACACGAAACAAAACCTCGGCATGAAGAAACGTTATCGCTTTGAGAAGAGTGGCACTGAACACGATGGTGGGTGGATCTTGCATGAATACAGCCTTCACTCATCTTTGATAAACACCGACCCTTCAGCCGTTAATTATGTTCTATGCAGATTTAGAAAGAACTTGAGACATAATACTACTACAGGTAGGAGAAATACTAGGCCGAATGTGCCCAGGGTCACCAGACAACGTAGGACCGTCGTTCTTGCACTCGAGGTTACGCATCAATCTGACATTAATGATGTTGGGTTGGGTGAAGAAGATATTTGCGAAGGACCACTAAACCATGCAGACAGTGGAAACAACATAACTGAGATGGTTGAAACTAGCACTAGAGCAGAGTCAGAATGTGAGGATGAAGAAGATGGTGACCCCACTTTGTCTTTTGGGGAGTTATTTGCGTTGGAGTTAAGAAGTTATGCAGAATGCTTGACCAAAGAGGAAGACATCCCCATGCTTCCCAATACATTTTACAGGGACTTGTTGTCGGAAAATATTGATATTAAGTACCTCAAGTAG 876 0.4441 MALGSSSRKEFKPTDDQLLRLFLYNKVHGKPVPNDATILEYDLFGERNPWEIWQEFEGPYSYDEKDLYFFTILKRKFEGGTSGRVVRTIGCGAWEGEDVGKAIVATDTKQNLGMKKRYRFEKSGTEHDGGWILHEYSLHSSLINTDPSAVNYVLCRFRKNLRHNTTTGRRNTRPNVPRVTRQRRTVVLALEVTHQSDINDVGLGEEDICEGPLNHADSGNNITEMVETSTRAESECEDEEDGDPTLSFGELFALELRSYAECLTKEEDIPMLPNTFYRDLLSENIDIKYLK 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi208g00020 291 Gene3D NAC domain 14 164 IPR036093 GO:0003677|GO:0006355
Sebi208g00020 291 ProSiteProfiles NAC domain profile. 5 160 IPR003441 GO:0003677|GO:0006355
Sebi208g00020 291 PANTHER NAC TRANSCRIPTION FACTOR 56 10 191 - -
Sebi208g00020 291 Pfam No apical meristem (NAM) protein 10 138 IPR003441 GO:0003677|GO:0006355
Sebi208g00020 291 SUPERFAMILY NAC domain 11 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi208g00020 Sebi-Chr208 517252 519272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi208g00020 11 160 NAC Transcription Factor Family AT3G15510 31.737 4.86e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi208g00020 NAM 8.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi208g00020 - - mtr:11433340 249.98