Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi208g00015 ATGGGTTCTGGCTCTGTTACCAAATCACCACCACCACCACCCTCTTCCTCCTCGCCGCCCAACTCTTCCACTGAGTCCCTTGATGGGTTGAAGTTTGGTAAAAAAATATACTTTGAAGCAGCTCAGGCCAAACCAAGTGGTGGGGCCTCTTCATCTTCTTCTTCATCCATAGGGCCAAAGAAGGGAAGGGGTGGTGCTGTTCAGGGAGCTCAACCTCCTAGGTGTCAGGTTGAAGGTTGTAAAGTAGATCTGAGTGGTGCTAAGGCTTACTATTCTAGGCATAAAGTTTGTGGCATGCATTCCAAATCCCCTACTGTCGTTGTCGCTGGTCTGGAGCAAAGTGGGTATGTTCTGCTTTACTTTCCTCTGCCTCCTCTTGCCTTATTACTCACATTGGGTTGTCCTCCTTTATATACATTCTGGTTTTAA 429 0.4755 MGSGSVTKSPPPPPSSSSPPNSSTESLDGLKFGKKIYFEAAQAKPSGGASSSSSSSIGPKKGRGGAVQGAQPPRCQVEGCKVDLSGAKAYYSRHKVCGMHSKSPTVVVAGLEQSGYVLLYFPLPPLALLLTLGCPPLYTFWF 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi208g00015 142 MobiDBLite consensus disorder prediction 43 74 - -
Sebi208g00015 142 Gene3D - 71 117 IPR036893 GO:0003677|GO:0005634
Sebi208g00015 142 MobiDBLite consensus disorder prediction 45 59 - -
Sebi208g00015 142 ProSiteProfiles Zinc finger SBP-type profile. 72 113 IPR004333 GO:0003677
Sebi208g00015 142 SUPERFAMILY SBT domain 72 113 IPR036893 GO:0003677|GO:0005634
Sebi208g00015 142 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 113 IPR044817 GO:0003677
Sebi208g00015 142 MobiDBLite consensus disorder prediction 1 28 - -
Sebi208g00015 142 Pfam SBP domain 75 113 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi208g00015 Sebi-Chr208 430953 431535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi208g00015 30 113 SBP-box Gene Family AT3G57920 47.619 1.23e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sebi208g00015 SBP 2.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi208g00015 - - twl:119998894 143.665