Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi207g00060 ATGGATCCACAAAGCGAACAAAGCAGCACCAACAACCCGAGAAGCATAATCTTCAACAAATACGAGATGGGGCGGGTCCTGGGTCAGGGCAATTTCGCCAAGGTCTACCATGGCAGAAACCTTGCGACCAACGAGAGCGTGGCCATCAAGGTCATCAAGAAAGACAAGCTCAAAAAAGAGAGGCTTGTCAAACAGATAAAGCGCGAGGTTTCCGTGATGCGTTTGGTTCGTCACCCTCACATCGTGGAGCTCAAGGAAGTGATGGCCACAAAGGGGAAGATCTTCCTCGTCATGGAATACGTCAAAGGCGGTGAACTCTTCGCCAAAGTCGCAAAAGGAAAGCTCAAAGAACAAGTTGCTAGAAAGTACTTTCAACAACTCATCAGCGCCGTCGATTTCTGCCACAGCCGCGGCGTCACCCACCGTGATCTCAAGCCTGAGAATCTCCTCTTGGATGAAAACGAGGACCTTAAAGTCTCCGACTTTGGCCTCTCCGCCTTGCCGGAACAACGCCGTTCCGATGGGATGCTTCTCACGCCGTGTGGGACCCCTGCTTATGTTGCACCAGAGGTGTTGAAGAAAAAGGGCTATGATGGTTCCAAGGCTGATATATGGTCCTGTGGTGTCATTCTCTATGCTTTGCTTTGTGGGTATCTTCCATTTCAAGGTGAGAATGTGATGAGGATTTATAGGAAGGCGTTTAAAGCTGAATATGAGTTACCTGATTGGATTTCACCACAGGCCAAGAACTTGATCTCTAATCTGCTTGTTGCTGATCCTGAAAAGAGGTATTCAATCATTGACATCATGCAGGATCCTTGGTTTCAAATTGGGTTCATGAGACCCATTGCTTTTTCGATGAAGGAAGATAACATCAACATTGATTTCAATGAGGATGGAGATGGTGGAGAAGAAGGAGAGGTTCCTGAAATGATGGGGGCAATGGCAAAGCCAGCTCGTCCTTTTTACAATGCGTTTGAGATCATTTCGTCTTTGTCACATGGTTTTGATCTTAGGAGCTTGTTTGAGACGAGGAAGCGATCCCCATCTATGTTCATATCCAAGTTTTCGGCTTCGGCGGTGGTGGAGAAGCTTGAGGAGGTGGCGAAGAAGCTCAAGTTTAGGATAACGGGGAAGAAAGAGTTCATGGTGAGGATGCAGGGGACAAAAGAAGGGAGGAAGGGGAAGCTGGCCATGACGGTGGAGGTTTTTGAGGTGGCGCCGGAGGTGGCGGTGGTTGAGTTTTCTAAGTCTGCCGGAGACACGCTTGAGTACATTAAGTTCTGTGAGGAACAAGTGAGACCTTCCCTCAAAGACATTGTTTGGAGCTGGCAGGGTGACAGTGTTGCCGATTGA 1356 0.4845 MDPQSEQSSTNNPRSIIFNKYEMGRVLGQGNFAKVYHGRNLATNESVAIKVIKKDKLKKERLVKQIKREVSVMRLVRHPHIVELKEVMATKGKIFLVMEYVKGGELFAKVAKGKLKEQVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPEQRRSDGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALLCGYLPFQGENVMRIYRKAFKAEYELPDWISPQAKNLISNLLVADPEKRYSIIDIMQDPWFQIGFMRPIAFSMKEDNINIDFNEDGDGGEEGEVPEMMGAMAKPARPFYNAFEIISSLSHGFDLRSLFETRKRSPSMFISKFSASAVVEKLEEVAKKLKFRITGKKEFMVRMQGTKEGRKGKLAMTVEVFEVAPEVAVVEFSKSAGDTLEYIKFCEEQVRPSLKDIVWSWQGDSVAD 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi207g00060 451 CDD CIPK_C 324 438 - -
Sebi207g00060 451 FunFam Non-specific serine/threonine protein kinase 14 310 - -
Sebi207g00060 451 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 438 - -
Sebi207g00060 451 FunFam Non-specific serine/threonine protein kinase 319 442 - -
Sebi207g00060 451 SMART serkin_6 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi207g00060 451 Gene3D Kinase associated domain 1, KA1 319 443 - -
Sebi207g00060 451 ProSiteProfiles Protein kinase domain profile. 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi207g00060 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Sebi207g00060 451 ProSitePatterns Protein kinases ATP-binding region signature. 27 54 IPR017441 GO:0005524
Sebi207g00060 451 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi207g00060 451 Pfam NAF domain 322 377 IPR004041 GO:0007165
Sebi207g00060 451 Gene3D Transferase(Phosphotransferase) domain 1 12 309 - -
Sebi207g00060 451 ProSiteProfiles NAF domain profile. 318 343 IPR018451 GO:0007165
Sebi207g00060 451 SUPERFAMILY Protein kinase-like (PK-like) 17 276 IPR011009 -
Sebi207g00060 451 FunFam Non-specific serine/threonine protein kinase 12 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi207g00060 Sebi-Chr207 589340 590695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi207g00060 16 448 CBL-interacting serine-threonine protein kinases AT5G25110 62.818 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Sebi207g00060 Pkinase 1.4e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi207g00060 - - lja:Lj3g3v2118210.1 713.375