Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi207g00036 ATGCCGAGATTAACGTGCAATGCTTGCAACACAGAATTCAAGGATGCCGCAGACCATAAGCTCCATTACAAGTCCGAGTGGCATCGCTACAACCTCAGGCGCAAGGTTGCCGGGGTTCCTGGGGTGACTGAAGCACTATTTCTTGCTAGACAAGCTGCACTTGCTCAAGAGAAAGATAAATCAAATGAAACCCCCATGCTCTATAGCTGTGGCCTTTGTGGCAAGGATTATAAAAGTTCTAAAACTCATGCTGAGCATCTTAAATCACGTGGTCATTTGAAGCGGGTTTCTGAAGGAACTAGTCAGTCAGATGAGAAGGCAATAATTAAGCCACATCCGCAACGTGTTGTGAATAGGGCTCCTCCTAAAAGAGAGGCAGATAACACTACAAGGAATAAGCCTTCAAGTGACAGCAAAAAACCGTAG 426 0.4554 MPRLTCNACNTEFKDAADHKLHYKSEWHRYNLRRKVAGVPGVTEALFLARQAALAQEKDKSNETPMLYSCGLCGKDYKSSKTHAEHLKSRGHLKRVSEGTSQSDEKAIIKPHPQRVVNRAPPKREADNTTRNKPSSDSKKP 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi207g00036 141 Gene3D Classic Zinc Finger 54 121 - -
Sebi207g00036 141 SUPERFAMILY beta-beta-alpha zinc fingers 63 98 IPR036236 -
Sebi207g00036 141 Pfam Zinc-finger of C2H2 type 68 92 - -
Sebi207g00036 141 Pfam Zinc-finger of C2H2 type 5 28 - -
Sebi207g00036 141 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Sebi207g00036 141 SMART ZnF_U1_5 65 99 IPR003604 GO:0003676|GO:0008270
Sebi207g00036 141 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Sebi207g00036 141 PANTHER ZINC FINGER PROTEIN 622 3 135 IPR040025 -
Sebi207g00036 141 MobiDBLite consensus disorder prediction 81 101 - -
Sebi207g00036 141 MobiDBLite consensus disorder prediction 108 141 - -
Sebi207g00036 141 SMART c2h2final6 68 92 IPR013087 -
Sebi207g00036 141 SMART c2h2final6 4 28 IPR013087 -
Sebi207g00036 141 MobiDBLite consensus disorder prediction 81 141 - -
Sebi207g00036 141 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Sebi207g00036 141 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi207g00036 1 120 C2H2 Transcription Factor Family AT4G31420 67.213 8.49e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi207g00036 zf-met 0.016 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi207g00036 K14816 - gmx:100809681 224.172