Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi207g00033 ATGGCTAAGAAATCGCAGAAGAACACTTGTTCCTCTTCTTCTACTGCCAACACCAGGAAACGGACACGCAAAAGCACCCCAAGAGACTCACCTCCGCAACGAAGCTCAATCTACCGCGGTGTCACAAGGCATCGATGGACTGGTCGGTATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCACAGAGCAAGAAAGGAAGACAAGTGTATCTAGGAGCATATGACGATGAAGAAGCCGCAGCACGTGCCTATGACATGGCAGCATTGAAGTACTGGGGCCATCACACCATGCTCAATTTTCCTTTATCAAACTATCAAGAGGAGCTGAAGGAGATGGAGGGCCAGTCTAAAGAAGAATATATTGGATCCTTAAGAAGAAAAAGCAGTGGATTCTCTAGAGGAGTCTCAAAATACAGGGGCGTCGCAAGACACCACCACAACGGAAGATGGGAAGCTCGAATTGGCAGGGTCTTCGGCAACAAATATCTATACCTTGGAACTTATGCTACACAAGAAGAAGCGGCCACGGCATATGATATGGCAGCCATAGAGTACCGAGGACTTAACGCCGTTACAAACTTTGACCTCAGCCGTTATGTCAATTGGTTACGTCCAAAAGCCCAAGAAAGTAATCAAGAACTAAACCTTAATTCTGAGCTTGAGCTTGGCCCAAGCCCAACCACTGGTGAGATGACACCACCTACTTCAGCACTTGGGCTTCTCTTACAATCATCCAAATTCAAAGAAATGCTAGAAAAGACGACTACTAGTTCTTCGTCATCACCATCACCATCACCTACAGATAATGCAGCACCTGCAGAGTCATCAACCCCTCCTCGTCGAACTTTCCCCGAAGATATTCAAACAATCTTTGAATGTCAAGATTCAGGGATCTACACTGAAAATGATCATGACATTATTTTTGGTGACTTGAGCTCATTTTCTGCGCCAATTTTTCAATATGAGCTTGATGCTTGA 984 0.4512 MAKKSQKNTCSSSSTANTRKRTRKSTPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDMAALKYWGHHTMLNFPLSNYQEELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYVNWLRPKAQESNQELNLNSELELGPSPTTGEMTPPTSALGLLLQSSKFKEMLEKTTTSSSSSPSPSPTDNAAPAESSTPPRRTFPEDIQTIFECQDSGIYTENDHDIIFGDLSSFSAPIFQYELDA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi207g00033 327 ProSiteProfiles AP2/ERF domain profile. 139 197 IPR001471 GO:0003700|GO:0006355
Sebi207g00033 327 MobiDBLite consensus disorder prediction 1 37 - -
Sebi207g00033 327 MobiDBLite consensus disorder prediction 1 20 - -
Sebi207g00033 327 ProSiteProfiles AP2/ERF domain profile. 37 103 IPR001471 GO:0003700|GO:0006355
Sebi207g00033 327 MobiDBLite consensus disorder prediction 253 286 - -
Sebi207g00033 327 SMART rav1_2 139 203 IPR001471 GO:0003700|GO:0006355
Sebi207g00033 327 SMART rav1_2 37 109 IPR001471 GO:0003700|GO:0006355
Sebi207g00033 327 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 256 - -
Sebi207g00033 327 MobiDBLite consensus disorder prediction 214 238 - -
Sebi207g00033 327 CDD AP2 138 199 IPR001471 GO:0003700|GO:0006355
Sebi207g00033 327 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Sebi207g00033 327 PRINTS Ethylene responsive element binding protein signature 179 199 IPR001471 GO:0003700|GO:0006355
Sebi207g00033 327 SUPERFAMILY DNA-binding domain 36 105 IPR016177 GO:0003677
Sebi207g00033 327 Gene3D AP2/ERF domain 37 105 IPR036955 GO:0003700|GO:0006355
Sebi207g00033 327 Gene3D AP2/ERF domain 138 199 IPR036955 GO:0003700|GO:0006355
Sebi207g00033 327 Pfam AP2 domain 37 96 IPR001471 GO:0003700|GO:0006355
Sebi207g00033 327 Pfam AP2 domain 138 189 IPR001471 GO:0003700|GO:0006355
Sebi207g00033 327 FunFam AP2-like ethylene-responsive transcription factor 36 105 - -
Sebi207g00033 327 FunFam AP2-like ethylene-responsive transcription factor 138 199 - -
Sebi207g00033 327 MobiDBLite consensus disorder prediction 253 278 - -
Sebi207g00033 327 SUPERFAMILY DNA-binding domain 138 199 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi207g00033 Sebi-Chr207 308282 312176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi207g00033 4 201 AP2-EREBP Transcription Factor Family AT5G57390 66.667 4.91e-92 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Sebi207g00033 AP2 3.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi207g00033 K09285 - qsu:111986476 446.817