Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi207g00021 ATGGATGGTATTCATGGGGGTGATTCTCGGATACACATCAGTGATGGACAGCATCCTATACATGTGCCATATGTGCAAGAACATGAGCATCATGGATTGCACCATATGAGCAATGGGAATGGGATCGATGATGATCAGAATAACGGCGGTGATGTTAACTGTGGTGGAAGTGAGAGTGTGGAAGGTGAAGTCCCCTCTAACCATGGAAATCTCCCTGAAAATCACACTGTAATAATGGATCAGGGGAGTGATGGTGGGGACCAGCTTACATTGTCTTTCCAGGGCCAGGTTTATGTCTTTGACTCCGTGTCACCAGAAAAGGTTCAAGCTGTATTGCTGTTACTGGGAGGCCGTGAAATACCTCCAACCGCACCTGCCATCCCAATATCTCCTCACCAGAGTAACCGGGGATTTACTGGTACTCCACAAAAATTCAGTGTCCCCCAGAGATTAGCTTCGTTGATTAGATTTCGTGAAAAGAGGAAGGAACGGAATTTTGACAAAAAAATCCGGTACACTGTTCGTAAAGAAGTAGCATTGAGGTATGTAAAAGGGTGGAAAGCAGGAAATAGTGGCAAGTTCCTTGAAGGGCATGGGACAATTTCCTCCTGGCAAGATTCCATCCTGAGGAAGCCTCAGGATGGTCTGTTGAATAGTCCAAATGAGGTTACATTGGTGTCTGCACAATACCTAGGAACAGAAAACCCACCACCATTGTTAGCATCAAATTGGATCAAGTTGCTGACAAATACAAGTGACTTCTGTAGGATGCAGAGAAATAAAGGTCAGTTTACATCTTCCAAGTCCAATCATGATGAATCTGGTTCAGGTGCAACAAATTGGGGAGCAAATGACAGCTGGACAGCAGACAATAATGGATCCCAACAGCAAGAAATTGTGCACTGTGGCATCAGTGAGAAGTGCACACCAATGATGCGACGTGGGCCTGAAGGGCCGAGAACACTCTGCAATGCTTGTGGACTAATGTGGGCAAATAAGGGAACTCTGAGGGATCTATCAAGGGCAGCTCCCTTGCCCGGACAAAATTCATCATTAAACAAGAATGAGGTCGGAAACCATAAATTCATTGCCAACTTTGAAGCTTAG 1107 0.4535 MDGIHGGDSRIHISDGQHPIHVPYVQEHEHHGLHHMSNGNGIDDDQNNGGDVNCGGSESVEGEVPSNHGNLPENHTVIMDQGSDGGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTAPAIPISPHQSNRGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRYVKGWKAGNSGKFLEGHGTISSWQDSILRKPQDGLLNSPNEVTLVSAQYLGTENPPPLLASNWIKLLTNTSDFCRMQRNKGQFTSSKSNHDESGSGATNWGANDSWTADNNGSQQQEIVHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAAPLPGQNSSLNKNEVGNHKFIANFEA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi207g00021 368 MobiDBLite consensus disorder prediction 261 294 - -
Sebi207g00021 368 Pfam CCT motif 150 180 IPR010402 GO:0005515
Sebi207g00021 368 Gene3D - 295 343 IPR013088 GO:0006355|GO:0008270
Sebi207g00021 368 MobiDBLite consensus disorder prediction 32 74 - -
Sebi207g00021 368 SMART tify_2 82 117 IPR010399 -
Sebi207g00021 368 Pfam GATA zinc finger 301 335 IPR000679 GO:0006355|GO:0043565
Sebi207g00021 368 CDD ZnF_GATA 300 351 IPR000679 GO:0006355|GO:0043565
Sebi207g00021 368 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Sebi207g00021 368 Pfam tify domain 87 116 IPR010399 -
Sebi207g00021 368 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Sebi207g00021 368 SMART GATA_3 293 346 IPR000679 GO:0006355|GO:0043565
Sebi207g00021 368 PANTHER GATA TRANSCRIPTION FACTOR 28 26 181 IPR045280 GO:0006355
Sebi207g00021 368 MobiDBLite consensus disorder prediction 40 54 - -
Sebi207g00021 368 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 301 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi207g00021 Sebi-Chr207 220969 224922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi207g00021 245 359 Tify Gene Family AT1G51600 60.684 1.45e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi207g00021 GATA 9.4e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi207g00021 - - pvu:PHAVU_008G254600g 335.109