Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi207g00017 ATGGAAGAGCTATTGAAGAAGCATGGTTGGAAAGAAGGAATTGGTCTTGGGATCTCTGAGCAAGTTTTGTTTCTTACTCTCTTTTATTCTTCACTAAGAGATGGAATTAGCAAGATGGGTGAAGAGGTGAAGGCATTTGTTCCAGAGTCTGTGCTGAAGAAGCAGAAGAGGGAAGAGGAGTGGGCATTGGCCAAAAAGCAGGAGCTTGAAGCTGCCAAGAAGAAGAGAGCTGAGAGCCGTAAGCTGATCTACAGCAGGGCTAAGCAGTATGCCAAGGAATACGATGAGCAGGAAAAGGAATTGATTAGATTGAAACGTGAGGCAAAGCTGAAAGGTGGATTTTATGTTGATCCAGAGGCTAAGCTCTTGTTTATTGTTCGCATTCGTGGTATTAATGCCATGCATCCCAAGACAAGAAAGATCCTGCAGCTATTGCGATTGAGACAGATTTTCAATGGTGTATTTCTTAAAGTCAACAAAGCAACAATGAACATGCTTCACAGAGTTGAGCCTTATGTGACTTATGGATACCCAAATTTGAAGAGTGTTAGGGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGAACTGCTCTAACTGACAACTCCATTATTGAGCAGGCACTGGGCAAGTATGGAATCATATCCACTGAAGATCTTATCCATGAGATCTTTACTGTTGGTCCTCATTTTAAGGAGGCAAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTTTGGGCGGTTTAAAGAAGAAGAGGAACCACTATGTTGAAGGAGGTGATGCAGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAACTAA 846 0.422 MEELLKKHGWKEGIGLGISEQVLFLTLFYSSLRDGISKMGEEVKAFVPESVLKKQKREEEWALAKKQELEAAKKKRAESRKLIYSRAKQYAKEYDEQEKELIRLKREAKLKGGFYVDPEAKLLFIVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIIEQALGKYGIISTEDLIHEIFTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi207g00017 281 Pfam Ribosomal L30 N-terminal domain 47 118 IPR012988 -
Sebi207g00017 281 Coils Coil 87 111 - -
Sebi207g00017 281 PANTHER 60S RIBOSOMAL PROTEIN L7 45 281 IPR039699 -
Sebi207g00017 281 CDD Ribosomal_L7_archeal_euk 122 281 IPR035808 -
Sebi207g00017 281 Coils Coil 52 72 - -
Sebi207g00017 281 Pfam Ribosomal protein L30p/L7e 123 173 IPR016082 -
Sebi207g00017 281 FunFam 60S ribosomal protein L7 179 241 - -
Sebi207g00017 281 Gene3D - 125 276 IPR036919 -
Sebi207g00017 281 ProSiteProfiles G-patch domain profile. 1 21 IPR000467 GO:0003676
Sebi207g00017 281 ProSitePatterns Ribosomal protein L30 signature. 141 173 IPR018038 -
Sebi207g00017 281 Gene3D - 179 241 - -
Sebi207g00017 281 NCBIfam 60S ribosomal protein uL30 48 281 IPR005998 GO:0000463|GO:0003735|GO:0022625
Sebi207g00017 281 SUPERFAMILY Ribosomal protein L30p/L7e 122 281 IPR036919 -
Sebi207g00017 281 FunFam 60S ribosomal protein L7 122 226 - -
Sebi207g00017 281 FunFam 60S ribosomal protein L7 227 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi207g00017 Sebi-Chr207 191764 194689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi207g00017 42 281 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.833 1.88e-154 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi207g00017 K02937 - gmx:100813342 421.394