Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi207g00015 ATGAATGTTCAGTTGCAACCTGCAATTATTTCTCCAGCTGTAGCATATCTTTGTGCCTTTGGCGTATTGCCTGATGCTGATACTAAGTTATTCACATATATAGAAGGCGGGGAGGCAGAGGTATCAGGATCTCCTACAGAGAAGGCAATTCTTTCATGGGCAGTCAAGTTGGGCATGAATTTTGGTCTTATCAGATCAAATTCAACAGTTCTTCACGTCTTCCCATTCAATTCTGAGAAAAAGCGAGGTGGTGTTGCTCTGAAGCTGGTGGACTCTGGAGTACATATACATTGGAAAGGAGCTGCAGAGATAGTTCTAGGATCATGTACTCAATATCTTGACTCAAATGGTCACTTGCAATCCATTGGAGAAGAGAAGGCATTTTTCAAGGAGGCTATTGATGACATGGCTGCTCGCAGCCTGCGTTGTGTTGCCATTGCATACAGATCGTATGAATTAGACAAAGTTCCATCTAATGAGGAGGAGTTAGACCAATGGTCCTTGCCAGAACATGAGCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGTGTCAAAGATGCTGTGAAAGTATGCACTGATGCTGGTGTTAAGGTCCGCATGGTTACTGGAGACAACCTTCAAACAGCAAAGGCAATAGCTTTGGAGTGTGGGATACTGGCTTCAAATGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGAAATTCCGTGAGCTATCTGAAAAAGAAAGGGAACAGGTTGCCAAGAAAATTACGGTGATGGGAAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCACTACGTAAAGGAGGTGAAGTCGTTGCTGTAACAGGAGATGGCACCAATGATGCTCCTGCACTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTAGATGATAACTTTGCATCTGTAGTAAAGGTTGTCCGCTGGGGCCGCTCTGTATATGCAAATATTCAGAAATTTATCCAGTTCCAGCTTACTGTTAATGTTGCTGCTCTTGTAATAAATGTTGTGGCAGCAATAACATCTGGTGATGTTCCATTAAATGCAGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCCCTTGCACTGGCTACTGAACCACCAACAGACCACCTAATGCACAGATCACCAGTTGGCCGAAGGGAACCTCTTATAACGAATATCATGTGGAGAAACTTGTTCATTCAGGCTGTCTATCAAATCATTGTTCTTCTTGTTCTTAACTTCTGCGATGAAAGTCTTCTGCCTAAACAAGATACTAGAGCCCATGCCTTTCAAGTGAAGAATACTTTAATATTCAATGCATTCGTCATGTGCCAAATATTCAACGAGTTCAATGCTCGGAAACCAGATGAGATGAATGTCTTCCGAGGAGTGACTAAGAACCGTCTCTTCATGGGAATTATTGGAATTACTTTTATACTTCAGGTGAATAGGCAACCTTTTGTTATTTGTATAATCCATTTGCAAACTTTCTCACTCTATTCCAAATTGTTAGATAATCATCATCGAGTTCCTTGGAAAGTTCACCTCGACAGTGAAGCTTGA 1632 0.4185 MNVQLQPAIISPAVAYLCAFGVLPDADTKLFTYIEGGEAEVSGSPTEKAILSWAVKLGMNFGLIRSNSTVLHVFPFNSEKKRGGVALKLVDSGVHIHWKGAAEIVLGSCTQYLDSNGHLQSIGEEKAFFKEAIDDMAARSLRCVAIAYRSYELDKVPSNEEELDQWSLPEHELVLLAIVGIKDPCRPGVKDAVKVCTDAGVKVRMVTGDNLQTAKAIALECGILASNEDAVEPNIIEGKKFRELSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAITSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLFIQAVYQIIVLLVLNFCDESLLPKQDTRAHAFQVKNTLIFNAFVMCQIFNEFNARKPDEMNVFRGVTKNRLFMGIIGITFILQVNRQPFVICIIHLQTFSLYSKLLDNHHRVPWKVHLDSEA 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi207g00015 543 SUPERFAMILY HAD-like 126 389 IPR036412 -
Sebi207g00015 543 Gene3D - 35 184 IPR023299 GO:0000166
Sebi207g00015 543 FunFam Calcium-transporting ATPase 301 541 - -
Sebi207g00015 543 FunFam Calcium-transporting ATPase 1 184 - -
Sebi207g00015 543 FunFam Calcium-transporting ATPase 177 329 - -
Sebi207g00015 543 Pfam Cation transport ATPase (P-type) 35 111 - -
Sebi207g00015 543 NCBIfam calcium-translocating P-type ATPase, PMCA-type 32 505 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Sebi207g00015 543 Pfam haloacid dehalogenase-like hydrolase 147 298 - -
Sebi207g00015 543 PANTHER CATION TRANSPORTING ATPASE 18 506 - -
Sebi207g00015 543 Pfam Cation transporting ATPase, C-terminus 369 505 IPR006068 -
Sebi207g00015 543 Gene3D - 185 329 IPR023214 -
Sebi207g00015 543 NCBIfam HAD-IC family P-type ATPase 250 365 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi207g00015 543 Gene3D - 330 505 - -
Sebi207g00015 543 PRINTS P-type cation-transporting ATPase superfamily signature 177 188 - -
Sebi207g00015 543 PRINTS P-type cation-transporting ATPase superfamily signature 199 209 - -
Sebi207g00015 543 PRINTS P-type cation-transporting ATPase superfamily signature 284 303 - -
Sebi207g00015 543 PRINTS P-type cation-transporting ATPase superfamily signature 308 320 - -
Sebi207g00015 543 SUPERFAMILY Calcium ATPase, transmembrane domain M 334 505 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi207g00015 Sebi-Chr207 151196 158612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi207g00015 1 505 Primary Pumps ATPases AT3G21180 77.075 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi207g00015 K01537 - gmx:100777845 863.218