Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi207g00014 ATGGGAGTGGATTTGAGGCAAGTGGTGGCGGGTATTCTCACCATCACCATGTTCGTCATGCTTATCCATATGATCAAAAGGGACCATTTTGATTCTGTTGATGATAAACTTCCAGGAACAACAGAGGATGTCAACTATGAAAATATGAAGCTTGATGCTACTCACGTAAGAAAGAATATAGTAGGGCTCTGGAAGGGAGATGCTGATGAGTTAAAACCGTGTTGGGTTAAGCCATCTGGAGATGCCGTGATTGTTACTAGAAGTCTTGGGGCGACACTTGTGATCCCTGATATCAGAGGAAGCCAACCTGGTGACAAGAGGAACTTTGAGGACATTTATGATGTTGATGCATTCATGAAAAGCATGGAAGGAGTGGTCAGAGTGATAAAGGATCTTCCTGCTCATATATCTACACAGAAAATTGCAGCTGTGAAGGTCCCTAATCGGGTTACTGAAGACTACATAGCTAAACACGTTGAACCAATCTATAGAACAAAGGGAAATATAAGGCTTGCAACTTACTTTCCTTCAATAAACATGAGAAAGGCAGGGAAAAAAGGCGACACTGATTCTGTTGCATGCTTAGCAATGTATGGAAGTTTAGAGTTGCAGCCAGATATGCGTGACCTTGTTGACTCAATGGTTGAAAGACTCAGAACTTTAAGCCGAAATTCAGATGGCCAATTCGTAGCTGTGGATTTGAGAGTTGAGATGTTGGATAAGAAGGGTTGCCAAGGAAGTGATAATGATGGAGAGAAGAGCTGCTTCAATGCACAAGAGATTGCAGTGTTTTTGAGGAAGCTTGGGTTTGACAAGGATACTACAGTTTATGTGACACAATCAAGGTGGGATGGCAGCCTTGATTCTCTCAAGGATTTGTTCCCTAAAACTTATACAAAGGAAGCCATCATGCCCGCAGATAAGAAGACAAAGTTCCTAGATTCTCAAGATTCTGAATTGGAGAAAGTGATTGACTTTTATATTAGTTCTGAGAGTGATGTTTTTGTACCAGCTATTTCAGGTCTATTGTATGCCAATGTAGCTGGTAAGAGAATTGGTTCTGTTTTTATAATTCCGGTGAAAGAAAGAAAAACCAAAAAGAAAGGTACGGCCTCCAACATCACCACCAAAGGGGATTCGGTGCCATCGGAGCTACCGTTGAAGGAGGTGGTCCACGGCGGCGGGGACACCAGCACTTCAGCTTTTGCCTTCAGACCTTATCATCATTCCTCTATCAACACAACAACTTCACTTGGCTCCTACATGGAGCAACCTCCTCTTTTATCTTCATTAAAGCTAAAGCTAAAGCAGCCCCACCTCGCTTGTCATGCATCACAGGAAAAGAATGCAGTTTCTCTAAGGAATGATGCATTACCTGTTCATGGATTGTCTGAAATGATTGTTGGGGTTCTGGGAGGAGATCCTCAGGAGAACTGCCCAGCGAGTTCTCTGTCTTATCATCATATGGTTGGAAGCTTTGATGACAGCACTACAGTTGAGGAATTTGCAAAGAGATGTGGAGTATTAACTGTTGAAATTGAACATGTTGATGTGGCTACATTGGAAAAACTTGAGAACAAGGAGTTGACTGCCAACCCAAAGCCTCTACTATACGAATTATTCAGGTATTATCTTGGCATATTGGATAAGTATCAGCAAAAGGTTCACTTCTCTCAGCATGGCATTCCGCTTCCTGAATTTATGAGGATAGATGATATTGAAGGTGCTAAGAAAGTAGGGAAACTCTTTGGCTATCCACTTATGATCAAGATTCTTGGAGGATTCAATCGTGGTTTATATGCTGAAAAATGGGCACCCTTTGTCAAGGAACTAACTGTCATTGTGGTGAGAGGAAGAGACAATTCAATTTCATGCTATCCTGTCGTTGAAACTATTCACAGGGACAACATATGCCACATAGTTAAGGCTCCAGCTAATGTGAAATGGAAGATTAGGGAGCGTGCCATTGAAGTTGCTTTCAATGCTGTTAACTTTCTAGAAGGTGCTGGTGTGTTTGCAGTTGAATTGTTCTTGACTAGTGATGTCCCGGGTCATATCTTTGAACAGATTCACAACAATCTGACAATGTCAAACTCCACTAGATGTGCTGCTTGCAAATCTTTAAGGAGAAAATGTCCACCAGATTGTGTGCTAGCGCCATATTTTCCCCCAACCAATCCTGAGAGGTTTTCCTGTGTTCATAAAGTCTTTGGCGCTGGCAATATTACCAGAATGCTACTGGAACTTGGGGAGCATTTACGAGCTGAGGCTGCGGATTGCATGTGTTTCGAAGCGAGTTTACGTGTTAAGGATCCTGTTTATGGAGTCGTTGGAATAATCTCTCAATTGCAACAAGAGATAATACAAACTCAAAACGACATAATAAAGATAAAGGGTGAAACAGCATTTCATAATGCACAGAGACAACGACAGCTGCAGGATCAGCAACAAATGGTTCATGCTAATGATCAAGGTGACCTAGCAGCATTTTCACTTGTCAGTTCAATTGAACAGCAACCCAACCTCAGCATCTGTCAACACCATTTTGATGCGCCAACTTTTGCTGTTTTCCATACATGA 2580 0.4198 MGVDLRQVVAGILTITMFVMLIHMIKRDHFDSVDDKLPGTTEDVNYENMKLDATHVRKNIVGLWKGDADELKPCWVKPSGDAVIVTRSLGATLVIPDIRGSQPGDKRNFEDIYDVDAFMKSMEGVVRVIKDLPAHISTQKIAAVKVPNRVTEDYIAKHVEPIYRTKGNIRLATYFPSINMRKAGKKGDTDSVACLAMYGSLELQPDMRDLVDSMVERLRTLSRNSDGQFVAVDLRVEMLDKKGCQGSDNDGEKSCFNAQEIAVFLRKLGFDKDTTVYVTQSRWDGSLDSLKDLFPKTYTKEAIMPADKKTKFLDSQDSELEKVIDFYISSESDVFVPAISGLLYANVAGKRIGSVFIIPVKERKTKKKGTASNITTKGDSVPSELPLKEVVHGGGDTSTSAFAFRPYHHSSINTTTSLGSYMEQPPLLSSLKLKLKQPHLACHASQEKNAVSLRNDALPVHGLSEMIVGVLGGDPQENCPASSLSYHHMVGSFDDSTTVEEFAKRCGVLTVEIEHVDVATLEKLENKELTANPKPLLYELFRYYLGILDKYQQKVHFSQHGIPLPEFMRIDDIEGAKKVGKLFGYPLMIKILGGFNRGLYAEKWAPFVKELTVIVVRGRDNSISCYPVVETIHRDNICHIVKAPANVKWKIRERAIEVAFNAVNFLEGAGVFAVELFLTSDVPGHIFEQIHNNLTMSNSTRCAACKSLRRKCPPDCVLAPYFPPTNPERFSCVHKVFGAGNITRMLLELGEHLRAEAADCMCFEASLRVKDPVYGVVGIISQLQQEIIQTQNDIIKIKGETAFHNAQRQRQLQDQQQMVHANDQGDLAAFSLVSSIEQQPNLSICQHHFDAPTFAVFHT 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi207g00014 859 Gene3D - 591 741 - -
Sebi207g00014 859 ProSiteProfiles ATP-grasp fold profile. 554 598 IPR011761 GO:0005524|GO:0046872
Sebi207g00014 859 Gene3D - 460 557 - -
Sebi207g00014 859 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 549 682 - -
Sebi207g00014 859 Pfam GDP-fucose protein O-fucosyltransferase 81 351 IPR019378 -
Sebi207g00014 859 Pfam Lateral organ boundaries (LOB) domain 701 794 IPR004883 -
Sebi207g00014 859 ProSiteProfiles LOB domain profile. 700 801 IPR004883 -
Sebi207g00014 859 PANTHER O-FUCOSYLTRANSFERASE FAMILY PROTEIN 81 352 IPR024709 -
Sebi207g00014 859 Pfam ATP-grasp domain 597 681 IPR003135 -
Sebi207g00014 859 SUPERFAMILY PreATP-grasp domain 471 535 IPR016185 -
Sebi207g00014 859 Coils Coil 780 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi207g00014 Sebi-Chr207 141193 150027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi207g00014 698 802 AS2 family AT3G26660 56.190 2.56e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sebi207g00014 O-FucT 2.4e-25 CL0113