Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi206g00030 ATGAACCAAGATTTTGGTTGTGGTATGAGTGATGTTGTGGAGGGTAATGGTTTAGACAGTGATGTTGATAAGGTGTATAACACTATAATGGATAATTTACTTGGATTTGAGAATTTGGAGAAAGCTCTTGACCAATTGAGTATCCCATTGTCTACCCCATTGGTTACTGGGGTGCTGCATAGGCTTCGATATGATGAAAAGATTGCATTTAGGTTCTTCACATGGGCTGGTCATCAAGAGAATTATTCACATGAACCTTGTGCTTATAATGATATGATGGACATCCTATCTAGTACAAAGTTCAAGGTAAAACAGTTTCGCATAGTTTGCGATGTGTTGGATTATATGAAGAGGAACAACAAGAATAAAGTTCCAGTTGAAGTTCTCTTGACGATTTTGAGAAGATATACTGAGAAGTATCTAACTCATGTGCAGAAGTTTGCAAAGAAGAAGAGGATAAGAGTGAAGACGCAACCGGAAATAAATGCGTTTAACTTGCTGTTGGATGCTCTGTGCAAGTGTTGCTTAGTTGATGATGCTGAAGGTCTATATAAGAAAATGAGAAAGACGATCAACCCTAATGCAGATACGTATAATATATTGATTTTTGGGTGGTGTAGGGTTAGAAACCCAACTAGAGGAATGAAATTGCTGGAAGAAATGATTCAACTTGGTCATAGGCCTGACAATTTCACGTACAACACTGCCCTTGATACCTACTGCAAAGCAGGCATGATAACAGAGGCAGTGGATCTTTTTGAGTTCATGAGAACAAAAGGTTCAACCATATCTTCTCCCACTGCCAAGACTTATTCAATTATAATTGTGGCTCTTGCCCAAAATGATAGAATGGAGGACTGTTATAAGCTTATGGGGCATATGATTAGCAGTGGTTGTCTTCCTGATGTCACAACATACAAAGATATAATTGAAGGAATGTGCTTGTGTGGAAAGATAGATGAAGCTTACAAGTTCTTGGAAGAGATGGGAAACAAAGGTTACCCACCTGATATTGTTACATATAATTGTTTTCTCAAGGTCCTTTGTGACAATAAAAAGTCTGAGGAAGCCCTTAAACTATATGAAAGAATGATTGAATTGAGTTGTATTCCTAGTGTCCAGACTTACAATATGCTGATTTCAATGTTTTTTGACATGGATGAACCTGATGGGGCATTTGAGACTTGGCAGGAAATGGAAAAGAGGGGTTGCAGACCAGACACTGATACATACTGTGTGATGATTGAGGGGTTATTTAACTGCAATAAAACGGAAGATGCTTGTTTTCTTTTGGAAGAAGTGATAAACAAGGGAATAAAATTGCCATATAGAAAGTTTGACTCCTTTTTGATGCAACTTTCAGAGATTGGTGATCTCCATTCCATTCATAAGCTCTCAGATCACATGAGGAAATTCTATAACCATGCCATGGCAAGACGTTATACTCTAAGCCAGAAGCGTAGAAGTATGAGTTTGAGAATGAACCTCATGTTTATCCTGGGGATTTCTTCTTCCTTGGCCAGGAAAAAGGTTCAGAGGAAGTGCAAGATCAGAGGCTACAATATCAAAGTCGAAGCTCTCGACGAGATCCTCTCCTTCGTTACTCGCTTCGATGGCCCCGACGAAGACGAAGCAATCGATCTCCTCCTCGATCAGCTCGAACACGAATCTCTGAAATCTACCATAATCGACAAGGAGCCGGTTCACCGCGTGGTGAGCCTGCTATTGGAAGCTGAGGCGGCGGTTGAGGAAAGCTTCGATGCCTCTGCCTCCACTTCCGCCATTCGTGTTGTTGATGCCTTCCTGATTCCTAAGTATAAATATGACCCTATCAGGAAGCAATTCTACGAGCACACAGGCAGCTTACCTATTCATGGGGATGCATCATCAAAAGCGGCTCTGTACAGGGATAGGTTTCTCTTGTTGTCCCAGAGGCTCTCTCGTGACCAGCACTTTTCAAAGCCTGCTTTTGATTCTGAATTTTCACATTTTGGGAGCTGTGAGATATCTCCTATTCAATCTCTGGTTGGGCAAACAGGTAGAAGATGGGTAATGGGAGTAATATCTCAGCTGGAGGATGGACATTTTTATTTGGAAGACCTCACTGCTTCAGTTGAAATCAATTTATCTAAAGCTATATCCTTTT 2146 0.4063 MNQDFGCGMSDVVEGNGLDSDVDKVYNTIMDNLLGFENLEKALDQLSIPLSTPLVTGVLHRLRYDEKIAFRFFTWAGHQENYSHEPCAYNDMMDILSSTKFKVKQFRIVCDVLDYMKRNNKNKVPVEVLLTILRRYTEKYLTHVQKFAKKKRIRVKTQPEINAFNLLLDALCKCCLVDDAEGLYKKMRKTINPNADTYNILIFGWCRVRNPTRGMKLLEEMIQLGHRPDNFTYNTALDTYCKAGMITEAVDLFEFMRTKGSTISSPTAKTYSIIIVALAQNDRMEDCYKLMGHMISSGCLPDVTTYKDIIEGMCLCGKIDEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKKSEEALKLYERMIELSCIPSVQTYNMLISMFFDMDEPDGAFETWQEMEKRGCRPDTDTYCVMIEGLFNCNKTEDACFLLEEVINKGIKLPYRKFDSFLMQLSEIGDLHSIHKLSDHMRKFYNHAMARRYTLSQKRRSMSLRMNLMFILGISSSLARKKVQRKCKIRGYNIKVEALDEILSFVTRFDGPDEDEAIDLLLDQLEHESLKSTIIDKEPVHRVVSLLLEAEAAVEESFDASASTSAIRVVDAFLIPKYKYDPIRKQFYEHTGSLPIHGDASSKAALYRDRFLLLSQRLSRDQHFSKPAFDSEFSHFGSCEISPIQSLVGQTGRRWVMGVISQLEDGHFYLEDLTASVEINLSKAISF 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi206g00030 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Sebi206g00030 715 NCBIfam pentatricopeptide repeat 163 189 IPR002885 -
Sebi206g00030 715 NCBIfam pentatricopeptide repeat 339 372 IPR002885 -
Sebi206g00030 715 NCBIfam pentatricopeptide repeat 270 303 IPR002885 -
Sebi206g00030 715 NCBIfam pentatricopeptide repeat 197 229 IPR002885 -
Sebi206g00030 715 NCBIfam pentatricopeptide repeat 305 338 IPR002885 -
Sebi206g00030 715 NCBIfam pentatricopeptide repeat 231 261 IPR002885 -
Sebi206g00030 715 NCBIfam pentatricopeptide repeat 375 408 IPR002885 -
Sebi206g00030 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 190 IPR002885 -
Sebi206g00030 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Sebi206g00030 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Sebi206g00030 715 Gene3D - 503 573 - -
Sebi206g00030 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Sebi206g00030 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Sebi206g00030 715 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 24 495 - -
Sebi206g00030 715 Gene3D Tetratricopeptide repeat domain 366 440 IPR011990 GO:0005515
Sebi206g00030 715 Gene3D Tetratricopeptide repeat domain 293 365 IPR011990 GO:0005515
Sebi206g00030 715 Gene3D Tetratricopeptide repeat domain 223 292 IPR011990 GO:0005515
Sebi206g00030 715 Gene3D Tetratricopeptide repeat domain 38 222 IPR011990 GO:0005515
Sebi206g00030 715 Pfam PPR repeat 332 364 IPR002885 -
Sebi206g00030 715 Pfam PPR repeat 298 329 IPR002885 -
Sebi206g00030 715 Pfam PPR repeat family 371 419 IPR002885 -
Sebi206g00030 715 Pfam PPR repeat family 159 207 IPR002885 -
Sebi206g00030 715 Pfam PPR repeat family 228 279 IPR002885 -
Sebi206g00030 715 SUPERFAMILY HCP-like 178 440 - -
Sebi206g00030 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Sebi206g00030 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi206g00030 518 712 Core DNA Replication Machinery Family AT5G22110 61.538 1.47e-72 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi206g00030 - - gmx:100783580 896.73