Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi206g00016 ATGGAGATGAAGGACCAAGTAGAAGGCATAAGTTCAACAACCATATTTGGCAAAGCTAGTAACTGCTCTTACAATGGTGGAACACAATCTGAAAATGTTGCAAAATTGCTTGGAAACGGCCATACCCCCAAGGTTAGGAAACCATATACCATTACTAAACAAAGGGAGAAATGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTGTATGGTCGAGGCTGGCGTCAAATTGAAGAGCATATAGGTACCAAAACTGCAGTTCAGATTCGAAGCCATGCTCAGAAATTTTTCTCTAAGGTTGTGAGGGAATCTGATGGCAGTGCTGAAAGTTCTATTCATCCAATTGACATACCTCCTCCTAGGCCCAAGAGGAAACCCCTTCACCCATATCCCCGTAAATCAATTGACTCTTTCAAAGCACAGTCCATCCCAAATGAACCAGAAATATCTCCATCTACAAACCTTTCAGTTACAGAGAAAGACACCCCATCTCCAACCTCTGTGCTATCTTCATTTGGTTCAGAACCATTTGGCTCAGCATTTTCTGAGCAGACTAACAGATGCCTTTCACCAAATTCTTGCACCACTGATATTCACTCAGCCAGCTTGTCACCTGTTGAAAAGGAAAATGATTGCATGACATCCAAACCTTCTGAGGAGGAAGAGAAAGGATCTTTAGCTTCAGTCCCTTTATCCACTGTTTCAAACCCACTCATGAGCATGAAGTCTGAGATTAGTTCCAAGGAAACTGAATATTCAAAAAAAGATGCTGCCAATATGCCACACACTACTAGTATTAAGCTTTTTGGAAGAACAGTTTCTATGATAGGTAATCAGAAGTCAGTGAACGTGGCTGATGAGAATGTTAAGCCAAAAACTATAAAGTCTGGTGAAGTGGATGATGTTGAGAATGAAATGGTTGGCCAAGCAGGGGTATCCGAGAATCTGGATATACAGTTATCACTTGGAATGTGTAGTGATAACTGGCATATAACACCTGATGGAGCTAAAGTGACCAACATAGAACACCCAAAGGAGAATCTATGCTTCAGTGAATGTGCACCTGATGCATCTTTGCCATTGTGGAGTCTGTACCAAGGCCTTCCACCTTTTTACCTTAGGCCATGTAACCATCAGATTCTAAATCCTATGCCCCTTAGGCCTTCCTTGAAGGTAAAAACAAGAGAGGAGGAAAGTTCATGCACTGGTTCCAACACTGAATCAGTTTGTGATATGGAAAATCAAGGCAAGAACTCAGATGCTGTTGACTCTCAATGTCAAAAGTATCATGAGGAAGGAGTAGCACCCCAAAAGTCTGGTAGGGGGTTTGTACCATATAAAAGATGTTTAGCTGAAAGAGATGCAAATTCTTTAATTGTTGCCATGGAAGAGAGGGAGGGACAACGAGCACGGGTGTGCTCATAG 1434 0.4191 MEMKDQVEGISSTTIFGKASNCSYNGGTQSENVAKLLGNGHTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESDGSAESSIHPIDIPPPRPKRKPLHPYPRKSIDSFKAQSIPNEPEISPSTNLSVTEKDTPSPTSVLSSFGSEPFGSAFSEQTNRCLSPNSCTTDIHSASLSPVEKENDCMTSKPSEEEEKGSLASVPLSTVSNPLMSMKSEISSKETEYSKKDAANMPHTTSIKLFGRTVSMIGNQKSVNVADENVKPKTIKSGEVDDVENEMVGQAGVSENLDIQLSLGMCSDNWHITPDGAKVTNIEHPKENLCFSECAPDASLPLWSLYQGLPPFYLRPCNHQILNPMPLRPSLKVKTREEESSCTGSNTESVCDMENQGKNSDAVDSQCQKYHEEGVAPQKSGRGFVPYKRCLAERDANSLIVAMEEREGQRARVCS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi206g00016 477 SUPERFAMILY Homeodomain-like 49 103 IPR009057 -
Sebi206g00016 477 CDD SANT 57 100 IPR001005 -
Sebi206g00016 477 MobiDBLite consensus disorder prediction 141 174 - -
Sebi206g00016 477 MobiDBLite consensus disorder prediction 202 233 - -
Sebi206g00016 477 Pfam Myb-like DNA-binding domain 55 98 IPR001005 -
Sebi206g00016 477 SMART sant 54 102 IPR001005 -
Sebi206g00016 477 NCBIfam myb-like DNA-binding domain, SHAQKYF class 53 102 IPR006447 GO:0003677
Sebi206g00016 477 PANTHER SWI/SNF COMPLEX-RELATED 34 409 - -
Sebi206g00016 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 104 IPR017930 -
Sebi206g00016 477 MobiDBLite consensus disorder prediction 399 419 - -
Sebi206g00016 477 ProSiteProfiles SANT domain profile. 53 104 IPR017884 -
Sebi206g00016 477 MobiDBLite consensus disorder prediction 404 419 - -
Sebi206g00016 477 MobiDBLite consensus disorder prediction 110 174 - -
Sebi206g00016 477 Gene3D - 57 104 - -
Sebi206g00016 477 ProSiteProfiles Myb-like domain profile. 50 100 IPR001005 -
Sebi206g00016 477 FunFam protein REVEILLE 6 isoform X1 57 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi206g00016 Sebi-Chr206 475206 478101 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi206g00016 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi206g00016 - - gmx:778089 738.413