Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi206g00015 ATGGCTAACGTTGTTCGCGTTGGGGTAGCTGCTCTTCCTCTTCCTCCATTACCCATAACAAAGTCAAGTGCTTTCACTTTCAGCCATAGGACTAAGGGTCAAAGCAAGAGACTTCATCTGAATTGCTCCCAAACCAACCACAGAACAACCCCATTCTCTTTTACCTTATCATCATCGCTCAGAAACAAAGGTAGTTGCTCTGTGTTGGCGTGTCTTCCTCCTGCTTCTGAATCCTCAAGCTCATCTCCCAACACTAGACCCCCCTCTGCTTCTTCTTCAACTAAGCTCTATGTCAGTGGGCTATCATTTCGTACCACCGAAGAGAGTTTGCGGAATGCATTTAAAAGTTTTGGTCAACTTGTAGAAGTCAATCTGGTGATGGATAAAATTGCAAATAGATCAAGGGGTTTTGCTTTTCTTCGTTATGCAACTGAAGAGGAATCTCAGAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCGAGATCAGAACTAAGGCCAAGACACAAGCAAAACACTATGCAGTAA 561 0.4385 MANVVRVGVAALPLPPLPITKSSAFTFSHRTKGQSKRLHLNCSQTNHRTTPFSFTLSSSLRNKGSCSVLACLPPASESSSSSPNTRPPSASSSTKLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKIANRSRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRPRHKQNTMQ 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi206g00015 186 SUPERFAMILY RNA-binding domain, RBD 83 181 IPR035979 GO:0003676
Sebi206g00015 186 SMART rrm1_1 95 168 IPR000504 GO:0003723
Sebi206g00015 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 165 IPR000504 GO:0003723
Sebi206g00015 186 SMART rrm2_1 95 168 IPR003954 GO:0003676
Sebi206g00015 186 PANTHER NUCLEOLAR PROTEIN 8 79 178 - -
Sebi206g00015 186 MobiDBLite consensus disorder prediction 74 94 - -
Sebi206g00015 186 Gene3D - 70 184 IPR012677 -
Sebi206g00015 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi206g00015 Sebi-Chr206 471073 473586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi206g00015 94 183 Eukaryotic Initiation Factors Gene Family AT4G34110 31.915 7.51e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi206g00015 - K13195 gmx:100305561 219.935