Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi205g00028 ATGAGTCAATTCAACCACAGTGCAAACTGGCAGAACAACAACCATGAATCTAACGGATCATCCATTTTTAGAATGCTTTCTAGCAATGGATCAAGTGATCATCAATGGGAGGTCCCAATAGTCCCAGGGATAACTATTCACCCACTTGAAGAGACTGCTCTGAATAATACCATTTCTGAATCAATGGGAATGAATGTTTCATCTCCAATGAGCTCACTCCCTATTAGCAGTAGTGGTCCAAGCTTCCCTGGAAGGCTTTTTGGTACAACTATTCTCCTGGATCAGTTGACTCCTGGAACGAATACTAATACTCGTACTGTATCTCCAACTCTAACTACTCAAGGGGCTGTTGTTGAGATACACTCCACTGGAGAACATGAAGTAAATAGTGGTGGCAGTTCATCCCATGAAAATGAGCAGAGTACTGGTGAAGTAATGGAAGAAGAAGAGGAGGAGGGACGGGGTGGTGTTGGTGGGGAGGACATGATGAGCTTGCCTTTCAAGAGAAGATCTGACCATCCTTTAACAATCGGTGAAGGTTCAAGCAATGCAGGAGGGGGAAGAATCCCCAGACACAGAGTTGAAGAAGCCAACAACACAAACACACCATTAGGTGGTCTTCCTATGAATGTTGGTGTAGGTACTGAAAGTGCGAGTGCAATGGTCTCTTCTGCAGCTGAACAAGTTGCAAACCAAGAACCACATACTACTTTTGTGCCAACCCCGACGTTTATAAATTATGATCCTTATGAGGTTCATCTTCCGTTCGCAAACCAACCACCTGCTTCTCCACCTTGTTTGGTTTACTCGGTGGTTTCTGTGGAGCACGTGCCTCTTTTCTATCAAGTTCAACAAGGCTACCCTTGGTCTAGTAGAATGTTGAGGCCTCCTCCTTTAACTATACCTGCTCCTGCTACTGCAACTACAATGGGAAGCATTCCTAATCACCTGCGTTCTCCTCCTCAATTTGGATTGCGTATTGGAAATGGAAATAGTACTCCTGGGCCTAGTACTATTCCCAATCGTCCATTGCAAGTACCAAATCCAAATGGATGGTTCCGTAGGGTAAACGTGGAAGAACAATATGTAATGATGCCGCCACCTGCTGCTAATCACAGCCACGCCTTCCCTGCGTCTCTACGGACTCGCCAAACTAGTTCCACCCTAACACAGATCAACAACAACTTTCCTAGTGGATGGTTGAGGTTAATGGCTCAGAACCAACGCTACAGGCAGCTCAGGGATGAGGTTTTCAACGTCCTAGATTACATGCGAGACAACGGCCTTTTGCAGTTAGAGATTTTGGAGGCTCTGGAGAATGATCAGGGCTTTATGGATGGATTGACAGAAGAGCAAATTATGAGCCATATTGGACAAGAAGTTGTCCAATCTGCTCCTGAGAATCAAGATACATTAGAAAATGAGATATGTTCAATATGTCAGGAGGAGTATGTGAATGGAGAACAACTTGGGAGACTGGATTGTGGGCACAAATATCACCTTTCTTGCATCAAACAATGGCTGGTGCTGAGGAACAACTGCCCTATTTGCAAACAAACGGCTCTTGCCGTTGAAAATGATGATGATGAATAA 1593 0.447 MSQFNHSANWQNNNHESNGSSIFRMLSSNGSSDHQWEVPIVPGITIHPLEETALNNTISESMGMNVSSPMSSLPISSSGPSFPGRLFGTTILLDQLTPGTNTNTRTVSPTLTTQGAVVEIHSTGEHEVNSGGSSSHENEQSTGEVMEEEEEEGRGGVGGEDMMSLPFKRRSDHPLTIGEGSSNAGGGRIPRHRVEEANNTNTPLGGLPMNVGVGTESASAMVSSAAEQVANQEPHTTFVPTPTFINYDPYEVHLPFANQPPASPPCLVYSVVSVEHVPLFYQVQQGYPWSSRMLRPPPLTIPAPATATTMGSIPNHLRSPPQFGLRIGNGNSTPGPSTIPNRPLQVPNPNGWFRRVNVEEQYVMMPPPAANHSHAFPASLRTRQTSSTLTQINNNFPSGWLRLMAQNQRYRQLRDEVFNVLDYMRDNGLLQLEILEALENDQGFMDGLTEEQIMSHIGQEVVQSAPENQDTLENEICSICQEEYVNGEQLGRLDCGHKYHLSCIKQWLVLRNNCPICKQTALAVENDDDE 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi205g00028 530 MobiDBLite consensus disorder prediction 126 140 - -
Sebi205g00028 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 456 523 IPR013083 -
Sebi205g00028 530 SMART ring_2 477 517 IPR001841 -
Sebi205g00028 530 SUPERFAMILY RING/U-box 460 522 - -
Sebi205g00028 530 Pfam Ring finger domain 477 518 IPR001841 -
Sebi205g00028 530 ProSiteProfiles Zinc finger RING-type profile. 477 518 IPR001841 -
Sebi205g00028 530 MobiDBLite consensus disorder prediction 124 190 - -
Sebi205g00028 530 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 133 522 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi205g00028 Sebi-Chr205 1156604 1158798 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi205g00028 407 522 C3H Transcription Factor Family AT2G15530 40.678 1.34e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi205g00028 - K22753 aprc:113870256 134.42