Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi204g00103 ATGCAAGGAATCAACTCTCTCTTGAACTCTTCTCAAATCTCTCTCCAAGACCTCCACAACAACAACAACCAGATCCAAATGAACCACCAACAACTCAACCCTCACTTCGACCCAACTTCCCACGATGATTTCCTTGACCAAATGCTCTCTACCCTTCCTTCTTGCTCCTGGCCTGACCTCAACCCCAACAATAAGCCCTTGTGGGACCCTAATAACGCCCCTGATATCAAGCCCGCTGAAACGACGCCGTCTACCGCTGAGAATGTCGCTTTCCCTTACGATGAACACGCCACCTTGGCATCCAAGTTCCGTAACCACCAGATCAGCGCCACCTCTCCCTCAACCAAAGCCGCTCTCATGCTTCACCAACACCTCCTCATGTCCAGAGACCCTAACCTTCTCCAGATGCCGCTTTCCTTGCCTGGAAACGACGTCGTTGACGCCACCACCTTCAAATCTCCCAATCCTAGTGGTGAAGCTTCAGTTCAAGCTCTCTACAACGGCTTCGCCGGATCTCTGCATGGCACCGGTCAAGCCTCCAACCAGCCTCAGCATTTTCAACATCCTCAGAATCCGATTCAGGGGCAGAATTTCGGAGGTGCAGTTGCGGGAGGCGCAACGAACCAAGCTCAGGCGAGCGGTTCAGCCGGTGGAGCACCGGCTCAGCCGAGGCCGAGGGTTCGGGCTAGGAGAGGTCAAGCGACGGACCCACACAGCATCGCTGAAAGGTTACGAAGGGAGAGAATTGCAGAGAGGATGAAGGCCTTGCAGGAACTGGTCCCCAATGCCAACAAGACAGACAAGGCATCCATGCTGGATGAGATCATCGATTACGTGAAGTTCTTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTCGCTCCCCTTGTTGCTGATATGTCCTCTGAGGGAGGCGGTGACTGCATCCAAACCAACGGCAACAGCAACGGCGGTGGGGCCCTCACCCGGAACTCAAACAGCAACCAAACGACAGCGTCAACCTCAAACGACAGTCTCACTATGACGGAGCACCAGGTGGCCAAGCTAATGGAAGAGGACATGGGCTCCGCCATGCAATATCTTCAGGGTAAGGGTCTCTGCCTCATGCCAATTTCCCTCGCCACAGCCATCTCCACCGCCACGTGTCACACCAGGAACCCCTTGATCAACGGCAACAACCAGATCCCGAACAACGGCGGTGGCGGGACCCACACGAACCCTGCCAACGGCGAAGGGCCGTCGTCTCCGAGCATGTCCGTGCTGACGGTGCAATCGGCCGTTGACAGTGCCGTGAAAGACGCTGCCTCCGTTTCGAAGCCGTGA 1344 0.558 MQGINSLLNSSQISLQDLHNNNNQIQMNHQQLNPHFDPTSHDDFLDQMLSTLPSCSWPDLNPNNKPLWDPNNAPDIKPAETTPSTAENVAFPYDEHATLASKFRNHQISATSPSTKAALMLHQHLLMSRDPNLLQMPLSLPGNDVVDATTFKSPNPSGEASVQALYNGFAGSLHGTGQASNQPQHFQHPQNPIQGQNFGGAVAGGATNQAQASGSAGGAPAQPRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQTNGNSNGGGALTRNSNSNQTTASTSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLINGNNQIPNNGGGGTHTNPANGEGPSSPSMSVLTVQSAVDSAVKDAASVSKP 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi204g00103 447 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 233 282 IPR011598 GO:0046983
Sebi204g00103 447 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 96 384 - -
Sebi204g00103 447 MobiDBLite consensus disorder prediction 173 216 - -
Sebi204g00103 447 Gene3D - 228 290 IPR036638 GO:0046983
Sebi204g00103 447 FunFam Transcription factor bHLH66 230 295 - -
Sebi204g00103 447 MobiDBLite consensus disorder prediction 397 438 - -
Sebi204g00103 447 MobiDBLite consensus disorder prediction 173 239 - -
Sebi204g00103 447 MobiDBLite consensus disorder prediction 397 447 - -
Sebi204g00103 447 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 231 293 IPR036638 GO:0046983
Sebi204g00103 447 SMART finulus 239 288 IPR011598 GO:0046983
Sebi204g00103 447 MobiDBLite consensus disorder prediction 316 347 - -
Sebi204g00103 447 Pfam Helix-loop-helix DNA-binding domain 238 283 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi204g00103 Sebi-Chr204 1436351 1439402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi204g00103 210 446 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 61.538 1.23e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi204g00103 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi204g00103 - - gmx:100806899 521.161