Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi204g00097 ATGGGTGACAAAACCAACATCGATGTGCACTCCACTCTTCTCCATGGCAAGTACGAACTAGGCCGTCTTCTCGGCCATGGAACCTTCGCGAAGGTCTACCACGCTAGAAACCTTCAAACCGGAAAAAGCGTCGCCATGAAAGTCGTTGGAAAAGAAAAGGTAATCAAAGTCGGCATGGTGGAACAGATCAAGAGAGAAATCTCTGCCATGAACATGGTCAAGCATCCAAACATCGTTCAACTCCATGAAGTCATGGCTAGCAAGACCAAGATCTACATCGCCATGGAACTCATTCGCGGTGGCGAGCTCTTCAACAAGATCGCAAAGGGACGTTTGAGAGAAGACTCCGCCAGAATGTACTTCAAGCAACTCATCTCCGCCGTTGATTTCTGCCACAGCCGCGGTGTCTACCACCGTGATTTGAAGCCGGAGAATCTCCTCCTTGATGAAGAAGGAAACCTCAAGGTCACCGACTTTGGCCTCAGTACCTTCTCCGAACACCTCAGACAGGACGGTTTGCTCCACACGACTTGCGGAACTCCGGCGTATGTTGCGCCGGAGGTGATCGGAAAAAAAGGCTACGACGGTGCTAAGGCTGATATATGGTCCTGTGGTGTCATTCTCTATGTTCTTCTCGCAGGGTTTCTACCTTTCCAAGATGAAAATCTTGTTGCTATGTATAAGAAGATTTACAGAGGAGACTTCAAATGTCCTCCTTGGTTTTCCTCTGAAGCTCGAAGACTCGTCACCAAGCTTCTCGACCCGAACCCGAATACCCGAATCACGATCTCCAAGATCATGGACTCGTCGTGGTTCAGGAAATCATTGCCGAAAAACATGGTGAGAATGAGGAAAGATGATGAGGAATTTGATTTCGAGGAGAAATTGAAACAGCAGCAGCAGCAACCGTCGACAATGAATGCTTTTCATATAATTTCCCTTTCGGAAGGATTGGAAGAAGTGGCGAAGGCGGTGAAGTTTGATGTGAAGAAGAGTGATACCAAGGTGAGGTTGCAGGGTCAGGAGAGGGGAAGAAAGGGGAAACTGGCTATAGCGGCGGATATATACGCTGTTACGCCGTCGTTTTTGGTGGTGGAGGTGAAGAAGGATAATGGTGATACATTGGAGTATAACCAATTCTGTAGTAAAGAGCTTCGCCCTGCGCTTAAAGACATTGTTTGGAGAACCTCACCTGCTGAGAATCCCACACCTGCTTGA 1218 0.4811 MGDKTNIDVHSTLLHGKYELGRLLGHGTFAKVYHARNLQTGKSVAMKVVGKEKVIKVGMVEQIKREISAMNMVKHPNIVQLHEVMASKTKIYIAMELIRGGELFNKIAKGRLREDSARMYFKQLISAVDFCHSRGVYHRDLKPENLLLDEEGNLKVTDFGLSTFSEHLRQDGLLHTTCGTPAYVAPEVIGKKGYDGAKADIWSCGVILYVLLAGFLPFQDENLVAMYKKIYRGDFKCPPWFSSEARRLVTKLLDPNPNTRITISKIMDSSWFRKSLPKNMVRMRKDDEEFDFEEKLKQQQQQPSTMNAFHIISLSEGLEEVAKAVKFDVKKSDTKVRLQGQERGRKGKLAIAADIYAVTPSFLVVEVKKDNGDTLEYNQFCSKELRPALKDIVWRTSPAENPTPA 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi204g00097 405 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Sebi204g00097 405 CDD STKc_SnRK3 17 271 - -
Sebi204g00097 405 Gene3D Transferase(Phosphotransferase) domain 1 100 278 - -
Sebi204g00097 405 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Sebi204g00097 405 Gene3D Kinase associated domain 1, KA1 316 395 - -
Sebi204g00097 405 SUPERFAMILY Protein kinase-like (PK-like) 15 282 IPR011009 -
Sebi204g00097 405 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi204g00097 405 FunFam Non-specific serine/threonine protein kinase 8 302 - -
Sebi204g00097 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Sebi204g00097 405 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi204g00097 405 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 391 - -
Sebi204g00097 405 CDD CIPK_C 307 390 - -
Sebi204g00097 405 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi204g00097 405 Gene3D Phosphorylase Kinase; domain 1 15 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi204g00097 Sebi-Chr204 1337499 1338812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi204g00097 13 399 CBL-interacting serine-threonine protein kinases AT4G30960 70.353 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Sebi204g00097 Pkinase 2.8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi204g00097 - K07198 gmx:547644 693.73