Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi204g00080 ATGTTTGACTGTGGTTACAAGTCGCAATACATGGGTGGCCAGCGGGAAAAATTCGTGAGGTTGGATGACTTGGATTCTAGATTATCATCATCTTCTGATGCTGGAGTTAAAACATGTGGATTTAGTATTGATAAATTAACCCATGGTGGCCATGGAAACAGTACGACCTCTAGGTCTTTTAAAAGAGGAATGAAAAAGGGTTCTGAAGGACTGAAGTCAATTGGTCGATCACTAGGATTTGGGGTATCTAGGGCAGTGTTCCCAGAAGATCTTAAAGTTTCAGAAAAGAAGATATTTGATCCTCAAGACAAATTTTTGCTCTTATGGAATAAGCTTTTTGTAATCTCATGCATTTTGGCTGTGTCTGTGGATCCACTATTTTTTTATCTCCCTGTCATCAATGATTCTTTACACTGTCTTGGTATAGACCGGAAGTTGGCAATTACAGTTACCACCTTGAGGACAATCATTGATGTTTTCTATCTTATACACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCATCTCGAGTTTTTGGGCGGGGTGAGCTTGTGATAGATCCAGCACAGATAGCCAAGCGATACTTACGGCGGTATTTCATCATTGATTTCTTGTCAGTGTTGCCCTTACCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTACTCACAACAAAACGGGCCTTGCTGTTCATTATCTTGCTTCAGTATATTCCTAGATTTCTCCGTATGGTACCATTGACTTCTGAACTTAAGAGAACAGCTGGTGTCTTCGCTGAAACTGCTTGGGCAGGTGCTGCGTATTATTTGCTATTATTCATGCTCGCCAGTCATATAGTTGGGTCTTTTTGGTACTTGTTAGCTGTTGAACGCAATGACTTTTGCTGGCAGAAGGCTTGTAGTGACAATGGGTACAATAAAAACTTCTTGTATTGTGGCAACCAATACATGGACGGTTATAGTGCTTGGCAGAATAAAAGTGAAGATATTCTCACCTCCCGGTGCTCTCCAGATGATGATAATCCACCTTTTGACTATGGAATTTTCACACAAGCCTTGAAATCTGGTATTGTTTCATCTAAGAAGTTCTTCTCTAAGTACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAGGGGCTTGAAACTAGCACCTACCCTGGGGAGGTTATCTTTTCAATAGCATTAGCCATAGCTGGCCTTATCCTCTTTGCACTTCTGATTGGTAACATGCAGACGTATCTTCAGTCTCTTACCATTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGAGCTCAGAGAGCGCGTGAGACGATATGATCAATATAAGTGGTTGGCAACACGTGGTGTAGATGAAGAATCTTTGGTTCAGAGTCTCCCAAAGGATCTTCGAAGAGACATTAAGCGTCACCTCTGTCTGGCTTTAGTGAGAAGGGTTCCATTATTTGAGAGCATGGATGAGAGATTGCTGGATGCCATATGTGAGAGACTGAAGCCATGTTTATTTACTGAGAGTACTTACATTGTCCGGGAAGGAGATCCAGTTGATGAGATGCTTTTTATCATACGCGGTCGCCTAGAGAGTGTTACCACAGACGGTGGGAGGAGTGGGTTTTTTAATCGCGGTTTTTTAAAAGAGGCTGACTTCTGTGGAGAGGAGCTTCTAACCTGGGCACTGGATCCCAAATCTGGCGCTAACCTCCCATCTTCTACTCGAACAGTTAAGGCTTTAACTGAGGTTGAGGCTTTTGCTTTAACTGCTGAAGAGTTAAAATTTGTTGCCAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAACACACCTTCCGCTTTTACTCCCAACAATGGAGAACATGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGGTATTCCAAAAGGAAAATGATGGAGCTTCGTCGAAAGGAAGAACCTGAGGAGTCAGAAGGAACTCGCAGCAATGCCAGTGGCAGTTCCTACAGCCTCGGTGCCACCCTCTTGGCCTCAAGATTTGCTGCAAATGCTCTTCGTGGTGTACATCGCAATAGGAATGCTAAGACTGCCAGGGAGTTAGTGAAACTACAGAAACCTCCAGAGCCTGACTTTACTGCTGATGATATGTAA 2196 0.4344 MFDCGYKSQYMGGQREKFVRLDDLDSRLSSSSDAGVKTCGFSIDKLTHGGHGNSTTSRSFKRGMKKGSEGLKSIGRSLGFGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSVDPLFFYLPVINDSLHCLGIDRKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDFLSVLPLPQIVVWRFLQRSKGSDVLTTKRALLFIILLQYIPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLFMLASHIVGSFWYLLAVERNDFCWQKACSDNGYNKNFLYCGNQYMDGYSAWQNKSEDILTSRCSPDDDNPPFDYGIFTQALKSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLETSTYPGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEESLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGANLPSSTRTVKALTEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKMMELRRKEEPEESEGTRSNASGSSYSLGATLLASRFAANALRGVHRNRNAKTARELVKLQKPPEPDFTADDM 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi204g00080 731 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 90 726 - -
Sebi204g00080 731 ProSiteProfiles IQ motif profile. 641 670 IPR000048 GO:0005515
Sebi204g00080 731 ProSiteProfiles cAMP/cGMP binding motif profile. 505 635 IPR000595 -
Sebi204g00080 731 Pfam Ion transport protein 108 431 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi204g00080 731 SUPERFAMILY Voltage-gated potassium channels 100 427 - -
Sebi204g00080 731 MobiDBLite consensus disorder prediction 710 731 - -
Sebi204g00080 731 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi204g00080 731 PRINTS EAG/ELK/ERG potassium channel family signature 400 411 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi204g00080 731 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi204g00080 731 PRINTS EAG/ELK/ERG potassium channel family signature 468 475 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi204g00080 731 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi204g00080 731 PRINTS EAG/ELK/ERG potassium channel family signature 418 427 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi204g00080 731 Gene3D Helix hairpin bin 433 496 - -
Sebi204g00080 731 Gene3D - 111 430 - -
Sebi204g00080 731 FunFam Cyclic nucleotide-gated ion channel 1 432 496 - -
Sebi204g00080 731 Gene3D Jelly Rolls 503 623 IPR014710 -
Sebi204g00080 731 CDD CAP_ED 505 636 IPR000595 -
Sebi204g00080 731 SMART cnmp_10 505 636 IPR000595 -
Sebi204g00080 731 SUPERFAMILY cAMP-binding domain-like 434 625 IPR018490 -
Sebi204g00080 731 FunFam Cyclic nucleotide-gated ion channel 1 503 621 - -
Sebi204g00080 731 Pfam Cyclic nucleotide-binding domain 527 616 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi204g00080 Sebi-Chr204 1126800 1135742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi204g00080 11 729 Ion Channels AT5G57940 79.778 0.0 1169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi204g00080 K05391 - gmx:100820202 1344.72