Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi204g00048 ATGCCAGATTTGGGGAACCTATCTCTCTCCGCCACTCTCACGCTCTCTCCCTGCTCCGCCGTCAAACCCACCGATGTCGCCGATTCCGCCGTCAAAACCCTACACAACGGTTACGGCTCCGATGATGGCGGTGATGCTCGGGTTCTGAAGCGGAGTCGCGGTTCCCTTGATCGGGTCAAGAAGGCAGGCAATTACAAAGGCCTGGAGGATCGCCTCAAAGATCCTTTCACTTTTCCCTTTCTTTCTGGTGCTCCAAAAATGGTTGAATGTTCCTTTTGCCACCATTCTGTGTACCCTGGGGAGGAGCTGTTATGTTCTGTTCGTGGATGTGACGCACGTTACCATACGGAATGCGCAAAAGAAGCCGTTGGGGCTTCAAATCTGAAAAAATTCAAGTGTCCACAGCATGTATGCTTCATTTGCAAACAAAAATTGCACTTGAGGTGTGTGCGTTGCACAATGGCATTCCATAATAAATGTGCACCATGGCCAGATGCGGTGATCCCTCTGAAAGATCATCCTGGGCAAGCTGTTTGTTGGAGGCATCCTCCTGATTGGCGCCTGGATAGAAAGCCTGATACTTCAACAAGTGATATTTCGGAAGTATTTTGTCGCTTGCCTCTTCCATATATCAATGAGGAGTTCAAGATTGACTTCACTTGGAAAGACATGGATAGTAAGATGGAGCCACCGCCATATATACACATAAGACGCAATGTATACCTAGTGAAGAAGAAACGTAGTGTTGTAGATGATGGGGCAGGGTGCACCAGTTGCAGATCTACGTGCTCTGATGATTGTGTGTGCAGGGTTCAATGTATAAGCTGCTCAAAGGCTTGTCGCTGCTCAGAAAATTGCAATAACCGGCCATTTCGCAAAGAGAAAAAGATCAGGATTGTCAAGACTGAACTTTGTGGATGGGGAGTAGAGGCCGCTGAAGCAATCAATAAAGGTGGATTTATAATTGAGTATATTGGAGAAGTCATTGATGATGCTTTATGTGAAAAAAGACTTTGGGACATGAAATACAGGGGTGTACAGAATTTTTACATGTGTGAGATTCGAAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATATATCCCGCTTTTTAAACCATAGCTGCGATCCCAACTGTATTTTGGAAAAGTGGCAAGTTGATGGTGAAACACGAGTGGGTGTATTTGCTGCTCGTTCAATAGAAGTTGGAGAGCCGCTAACATACGATTACAGATTTGTGCAATTTGGTCCAGAGGTGAAATGCCACTGTGGTGCCCCAAACTGTCAAGGCTTTTTAGCCATCACTACTGTATGTAGGCAAAGTAATAGCAACTATAGACGGGAGGCAGGGGAGGGGTCTGAGTTAGAAATGATCGGAATAGAGTACATCTCAAACATTCTTATTCTATTCTTGTAG 1419 0.4517 MPDLGNLSLSATLTLSPCSAVKPTDVADSAVKTLHNGYGSDDGGDARVLKRSRGSLDRVKKAGNYKGLEDRLKDPFTFPFLSGAPKMVECSFCHHSVYPGEELLCSVRGCDARYHTECAKEAVGASNLKKFKCPQHVCFICKQKLHLRCVRCTMAFHNKCAPWPDAVIPLKDHPGQAVCWRHPPDWRLDRKPDTSTSDISEVFCRLPLPYINEEFKIDFTWKDMDSKMEPPPYIHIRRNVYLVKKKRSVVDDGAGCTSCRSTCSDDCVCRVQCISCSKACRCSENCNNRPFRKEKKIRIVKTELCGWGVEAAEAINKGGFIIEYIGEVIDDALCEKRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNISRFLNHSCDPNCILEKWQVDGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVKCHCGAPNCQGFLAITTVCRQSNSNYRREAGEGSELEMIGIEYISNILILFL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi204g00048 472 Pfam SET domain 306 411 IPR001214 GO:0005515
Sebi204g00048 472 PANTHER SET DOMAIN PROTEINS 63 433 - -
Sebi204g00048 472 ProSiteProfiles Post-SET domain profile. 418 434 IPR003616 -
Sebi204g00048 472 SMART set_7 295 418 IPR001214 GO:0005515
Sebi204g00048 472 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 471 IPR025787 -
Sebi204g00048 472 FunFam Histone-lysine N-methyltransferase 210 446 - -
Sebi204g00048 472 ProSiteProfiles SET domain profile. 295 412 IPR001214 GO:0005515
Sebi204g00048 472 SMART PHD_3 89 137 IPR001965 -
Sebi204g00048 472 ProSiteProfiles AWS domain profile. 251 295 IPR006560 GO:0005634|GO:0042054
Sebi204g00048 472 SUPERFAMILY SET domain 221 431 IPR046341 -
Sebi204g00048 472 CDD SET_ASHR3-like 296 433 - -
Sebi204g00048 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 185 IPR013083 -
Sebi204g00048 472 Gene3D SET domain 211 450 IPR046341 -
Sebi204g00048 472 SMART PostSET_3 418 434 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi204g00048 Sebi-Chr204 666519 671593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi204g00048 276 434 C2H2 Transcription Factor Family AT2G23740 37.222 1.39e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi204g00048 SET 1.2e-17 No_clan