Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi204g00047 ATGGCTGCCAATTGGGTTCTTCTTCTCCTTCTCTTTCTTTTTAGTGCTGCAGTTCTTTGTTCCTCTTCCGAGCCTCGCAACCACGAAGTGGAGGCTTTGATGAGCATAAGAGCAGAACTGAATGATCCACACGGTGTTCTGAGCAACTGGGATGAATTCTCCGTCGACCCTTGTAGTTGGGCTATGATCACTTGTTCCTCTGATTTCCTTGTTATAGGCCTAGGAGCACCAAGTCAATCTCTCTCTGGAACTTTGTCTCCGGCAATTGGAAATCTCACCAATCTTCGACAAGTGTTATTACAGAACAACAACATCTCTGGCAAAATCCCATCAGAGCTTGGTGTGCTTCCCAAGCTTCAGACTTTAGATCTTTCCAATAATAGGTTCACTGGGGTGATTCCTGGGTCTCTCGGTCAGTTGAATAGTCTCCAGTATCTGAGGCTGAACAACAATAGCTTGTCTGGGCCATTTCCTGTGTCACTAGCCAAAATCCCACAACTTGCCTTTTTGGACTTGTCTTATAACAATCTCAGTGGACCATTGCCCAGGTTTCCAGCTAGATCATTCAATGTTGTGGGAAACCCATTAGTTTGTGGGAGCAGCTCTACTGAAGGTTGCTCTGGTTCAGCAACCTTCATGCCCATGTCTTTCTCTCTAACATCATCACAAGGGAAAAACAAGTCCAAGAAACTAGCAATTGTGCTTGGGATCAGCCTTGGTTGTGTTTGTCTCGTATTTCTGTTTTTTGGGATTTTTTGGTATAGAAAGAAATGGCAGAACCAAGCAATCCTGTACCTTGGTGATTATCATCTGGAAGAGGGCCTTGTTAGCTTGGGAAATCTGAAACATTTCACTTTCAGAGAGCTCCAAACTGCAACAGATAATTTCAGCTCCAAGAACTTACTTGGTGCTGGAGGCTTTGGCAATGTTTATAGGGGGAAACTTGGTGATGGCACAATGGTGGCAGTGAAAAGGCTGAAGGATGTGACTGGAAGTGCTGGTGAATCACAGTTCCGAACAGAAGTGGAGATGATCAGCTTAGCAGTTCACCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTCCTAATGAAAAGTTGCTGATTTATCCTTTTATGTCTAATGGCAGTGTGGCCACCAGGCTTAAAGCTCTAGAGTTTGGAAAAACGCTTAATCAAAAAGGAGCAATGCTAGAGTGGGTCAGGAAAATACAGCATGAAAAGAAAGTTGAAGTGTTGGTGGACAAGGAACTAGGGAACAACTATGACAGAATAGAAGTGGGGGAGATGCTGCAAGTAGCTTTACTTTGTACTCAATATTTACCAGCCCACCGTCCCAAAATGTCTGAAGTGGTTCGAATGCTTGAAGGTGATGGTCTAGCTGAGAAGTGGGCAGCATCACATAATCATGGTGGTCTCAGTTTGCAAACCACCCTTAACAGCAACTGTAGCAAAAAAGGTTCATCCCACCCTACCACTGCTTCAAACCATGATGACAATAATGCTCATGATCGTTCCAGCACGTTTGGCATGACAATGGATGATGACGATGGTGATGAACATTCCTTGGATTCCTATGCCATGGAACTCTCTGGTCCTAGATAA 1605 0.4417 MAANWVLLLLLFLFSAAVLCSSSEPRNHEVEALMSIRAELNDPHGVLSNWDEFSVDPCSWAMITCSSDFLVIGLGAPSQSLSGTLSPAIGNLTNLRQVLLQNNNISGKIPSELGVLPKLQTLDLSNNRFTGVIPGSLGQLNSLQYLRLNNNSLSGPFPVSLAKIPQLAFLDLSYNNLSGPLPRFPARSFNVVGNPLVCGSSSTEGCSGSATFMPMSFSLTSSQGKNKSKKLAIVLGISLGCVCLVFLFFGIFWYRKKWQNQAILYLGDYHLEEGLVSLGNLKHFTFRELQTATDNFSSKNLLGAGGFGNVYRGKLGDGTMVAVKRLKDVTGSAGESQFRTEVEMISLAVHRNLLRLIGYCATPNEKLLIYPFMSNGSVATRLKALEFGKTLNQKGAMLEWVRKIQHEKKVEVLVDKELGNNYDRIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLAEKWAASHNHGGLSLQTTLNSNCSKKGSSHPTTASNHDDNNAHDRSSTFGMTMDDDDGDEHSLDSYAMELSGPR 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi204g00047 534 Gene3D Phosphorylase Kinase; domain 1 269 372 - -
Sebi204g00047 534 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Sebi204g00047 534 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Sebi204g00047 534 MobiDBLite consensus disorder prediction 497 516 - -
Sebi204g00047 534 Pfam Protein tyrosine and serine/threonine kinase 299 385 IPR001245 GO:0004672|GO:0006468
Sebi204g00047 534 PRINTS Leucine-rich repeat signature 119 132 - -
Sebi204g00047 534 PRINTS Leucine-rich repeat signature 164 177 - -
Sebi204g00047 534 FunFam Somatic embryogenesis receptor kinase 1 268 372 - -
Sebi204g00047 534 MobiDBLite consensus disorder prediction 476 534 - -
Sebi204g00047 534 SUPERFAMILY L domain-like 26 191 - -
Sebi204g00047 534 SUPERFAMILY Protein kinase-like (PK-like) 272 454 IPR011009 -
Sebi204g00047 534 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 383 466 - -
Sebi204g00047 534 SMART LRR_typ_2 140 171 IPR003591 -
Sebi204g00047 534 SMART LRR_typ_2 92 114 IPR003591 -
Sebi204g00047 534 SMART LRR_typ_2 116 139 IPR003591 -
Sebi204g00047 534 FunFam Putative LRR receptor-like serine/threonine-protein kinase 26 208 - -
Sebi204g00047 534 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Sebi204g00047 534 Gene3D Transferase(Phosphotransferase) domain 1 378 472 - -
Sebi204g00047 534 ProSiteProfiles Protein kinase domain profile. 296 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi204g00047 534 MobiDBLite consensus disorder prediction 476 496 - -
Sebi204g00047 534 Gene3D Ribonuclease Inhibitor 26 208 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi204g00047 Sebi-Chr204 624936 629280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi204g00047 6 384 Receptor kinase-like Gene Family AT2G23950 71.316 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Sebi204g00047 PK_Tyr_Ser-Thr 1.7e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi204g00047 - - lja:Lj6g3v1048910.1 662.144