Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi204g00028 ATGAACAGAAAGTCTCTGCCTCTGGCGTTTCTTGCTACAAACATTTCGACCAAGTTTCACGTTCCACCTTTTCAATGGCGATTCTTCTGCTCTCCACCCTCTCCTCCCTCCACCAACAAGCTCTTTGTTGGAGGGCTGTCATGGTCAGTGGACGAGAAGTCTCTCACAGACGCTTTCTCTTCGTTCGGAGATGTCACTGAAGTGAGGATAGTGTATGATAAAGACAGTGGTAGGTCTAGAGGCTTTGGATTTGTCATCTTTTCAAATGAAGATGATGCCAAATGTGCAAAGGATGCAATGGATGGAAAGGCACTGTTAGGTAGACCATTGAGGATAAGTTTTGCTCTTGAGAAGGCCTGTGGTGTACCTGTTGTAGTTCCTCGATTTTCAGATATTGGACATTTAAACAAGCACTAA 417 0.446 MNRKSLPLAFLATNISTKFHVPPFQWRFFCSPPSPPSTNKLFVGGLSWSVDEKSLTDAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRISFALEKACGVPVVVPRFSDIGHLNKH 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi204g00028 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 111 IPR000504 GO:0003723
Sebi204g00028 138 SUPERFAMILY RNA-binding domain, RBD 19 119 IPR035979 GO:0003676
Sebi204g00028 138 CDD RRM2_NsCP33_like 40 115 - -
Sebi204g00028 138 SMART rrm1_1 40 113 IPR000504 GO:0003723
Sebi204g00028 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Sebi204g00028 138 Gene3D - 29 120 IPR012677 -
Sebi204g00028 138 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 37 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi204g00028 Sebi-Chr204 386225 387391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi204g00028 41 96 C2H2 Transcription Factor Family AT2G19380 41.071 1.71e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi204g00028 - - lang:109361234 231.106