Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi204g00024 ATGATGAGCTGCTACCTGTTCATACTCGATCAACAAAGGCAGCAGCTACAAGTGCGAACAGAGGCAGCATCTTCAAATGAGTATGAGTTGCACCTTTGGGGGCTCTGCAAGTTAGCCAAGAACGGACGAAGCAACGAGGAGGACCGGCGCACGACAAGCAGGGACGGCAGCGATGACGGACAAGGAGGGCAGCGACGAGGCGATGATGGACAGGAAGGGCGGCGCGCATGGGGGACGACTGAGAAGGGAAAGTTTCTTCATTCAGTGTTGAAGGGGACCGGGTTTACATTTCAATGGGACCATGATATCCTAGGAGGGCAGGTTACTCCTCATTCAACAGTAATAGCACAGAGTGGAGGATCTGCTTTTGGTCTGCCTTCTTCAATCTCAGTAATGAAGAGACTCAATACCTCAGATACTATGGCTACTTTGCTTCCCATGTGCCCATCAAAAGGGGTGAATCAGGGGAATGAAATTGAAGGTTACAGTGAAGAATTTCAGGCAATGCTAGATAGATTGGACCAAGAAGATAGCCTTGAAGATGCTAGTTTAGTTTTGGAGAAGAAAAGAAGACTCAGTTTTGATCAAGTCAAAGCCTTAGAGAGAAGCTTTGAGTTGGACAACAAGCTAGAGCCAGAGCGCAAGGTGAAGCTAGCAGAAGAACTAGGCTTGCAACCAAGACAGGTTGCAATTTGGTTCCAAAATCGCCGTGCCCGTTGGAAAACAAAACAATTGGAGAAGGACTATGGTATTCTAAAGTCCAATTTTGATGTTCTCAAGGTTGAGTATAATAATCTTGAGCAAGAGAATGAGGCTCTTACTATAAAGCTAAGAGAGTTGAAAGCAAAATTGTGTAAAGTTGAAAGCAATGAGTCAGAGAAAGAAGAATCTCCCATTTCAGAAGTTAGAGACAGAGGAGCATCAGAGAGCAATTCAAATGGTGTGGTTAAGGAAGAAAGTAATGTTGATTCTCCTTTGTGTTTCAATGGATCTTTGCCAAGTTCAAGTTCAGTGATACACTGGCTTCACCACTCTGATTCAAGAGGGTCTCCTGATAGAATTTTTCAGAACCACTTTATGAGAATGGAGGAGCAGAATTTCTTTAGTATCAATGAGTTCTGCAATTTCTTTTCAGTTGATCAATCCCCAACCTTGTAA 1158 0.4404 MMSCYLFILDQQRQQLQVRTEAASSNEYELHLWGLCKLAKNGRSNEEDRRTTSRDGSDDGQGGQRRGDDGQEGRRAWGTTEKGKFLHSVLKGTGFTFQWDHDILGGQVTPHSTVIAQSGGSAFGLPSSISVMKRLNTSDTMATLLPMCPSKGVNQGNEIEGYSEEFQAMLDRLDQEDSLEDASLVLEKKRRLSFDQVKALERSFELDNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKQLEKDYGILKSNFDVLKVEYNNLEQENEALTIKLRELKAKLCKVESNESEKEESPISEVRDRGASESNSNGVVKEESNVDSPLCFNGSLPSSSSVIHWLHHSDSRGSPDRIFQNHFMRMEEQNFFSINEFCNFFSVDQSPTL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi204g00024 385 Coils Coil 249 283 - -
Sebi204g00024 385 Gene3D - 187 250 - -
Sebi204g00024 385 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 174 319 IPR045224 GO:0003700
Sebi204g00024 385 MobiDBLite consensus disorder prediction 43 78 - -
Sebi204g00024 385 CDD homeodomain 188 244 IPR001356 GO:0003677
Sebi204g00024 385 FunFam Homeobox-leucine zipper protein HOX13 191 240 - -
Sebi204g00024 385 ProSitePatterns 'Homeobox' domain signature. 218 241 IPR017970 GO:0000981|GO:0006355
Sebi204g00024 385 Pfam Homeobox associated leucine zipper 243 284 IPR003106 GO:0006355|GO:0043565
Sebi204g00024 385 ProSiteProfiles 'Homeobox' domain profile. 183 243 IPR001356 GO:0003677
Sebi204g00024 385 MobiDBLite consensus disorder prediction 293 317 - -
Sebi204g00024 385 SMART HOX_1 186 247 IPR001356 GO:0003677
Sebi204g00024 385 Pfam Homeodomain 188 241 IPR001356 GO:0003677
Sebi204g00024 385 SUPERFAMILY Homeodomain-like 187 245 IPR009057 -
Sebi204g00024 385 PRINTS Lambda-repressor HTH signature 223 239 IPR000047 GO:0003677
Sebi204g00024 385 PRINTS Lambda-repressor HTH signature 214 223 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi204g00024 Sebi-Chr204 326182 328411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi204g00024 132 385 Homeobox Transcription Factor Family AT4G40060 37.662 1.08e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi204g00024 Homeodomain 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi204g00024 K09338 - qsa:O6P43_015335 301.212